Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 107 2e-18
seq3468 95.1 1e-14
>seq6222
Length=12937
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|||||||| ||||| ||| || |||||||||||||| || || ||| | ||
Sbjct 5121 AATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCT 5180
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|||| ||| || || ||||| || || || || ||||| || || | ||| || |||||
Sbjct 5181 TCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCT 5240
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|||||| || || | | | | ||| | ||| || || | |||||| |||
Sbjct 5241 TGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTC 5300
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||||||||| |||||||| |||||||||||
Sbjct 5301 TTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||| ||| | | |||||||| || ||| || || || ||||||||||| |
Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || |||| |||| |||||| || ||||| ||||| || ||||| ||||||||
Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || ||||| ||||| ||| || | | | |||| ||| ||
Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| |||||| |||||||| |||| || || || || |||||||||
Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||| |||||||||||||| ||| ||| |||| |||
Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| |||||| |||||||| || || || ||||| || ||||| | || || || || |
Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | |||| | || || |||| || ||||||||
Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344
||||| ||||| || || || |||||||| |||||
Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCATACCGCCTC 4884
>seq3468
Length=50068
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208
||||| ||||||||||| || | |||| |||| |||||| |||||||| |||
Sbjct 38465 TTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGATC 38406
Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268
|| || ||||| ||||| || | || |||||||| ||||| |||||| |
Sbjct 38405 AAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTTCG 38346
Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328
| |||| | ||| ||||| | ||| || ||||| ||||||| |||||| || |||
Sbjct 38345 ATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGAAG 38286
Query 45329 ATTTGCATGTTG 45340
|| |||||| ||
Sbjct 38285 ATCTGCATGGTG 38274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394783272638209
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |