Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6222 116 3e-21 seq3468 82.4 6e-11 >seq6222 Length=12937 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||||||||| || ||||| || | | || || ||| Sbjct 4209 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCT 4268 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| || |||| | || ||||||||| ||| | |||||| || || Sbjct 4269 TCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCT 4328 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | | ||| |||||| ||||||| ||| | |||||| | Sbjct 4329 TGGATTT-TGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGT 4387 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| | || || || ||||| ||||| Sbjct 4388 TTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||||||||| ||||||||||| | || || | ||| Sbjct 4893 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 4952 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| || | || | | ||||||||| || | |||||| || || Sbjct 4953 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCT 5012 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | | ||| ||||| ||||| ||| | ||| ||| | Sbjct 5013 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTC 5072 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| || ||||||||||| Sbjct 5073 TTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||||||||| || ||||| || | || || || ||| Sbjct 4437 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCT 4496 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||| ||||| || |||| || | |||||| || ||| | |||||| || || Sbjct 4497 TCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCT 4556 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || ||||| | | ||| |||||| ||||| ||| | |||||| | Sbjct 4557 TGGATCT-TGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGT 4615 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||||| || || || || |||||||| Sbjct 4616 TTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || ||||| ||||| ||||||||||||||||| | || || || ||| Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| || | || | | ||||||||| || | |||||| ||||| Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || ||||| | ||| |||||| || ||| ||| | ||||| | Sbjct 4785 TGAATTT-TGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGT 4843 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | ||||| || ||||||||||| Sbjct 4844 CTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || |||||||| || || || || ||||||| || || || ||||||| Sbjct 3756 ACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCC 3815 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | | ||| ||||| || | |||||||| || | Sbjct 3816 AATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTGA 3875 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | | ||| ||||| || || ||| | ||||||| |||| Sbjct 3876 ATTT-TGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTT 3934 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| ||||| || || |||||||| Sbjct 3935 GCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||| || ||||||||||||| || || || |||||| || || Sbjct 3990 TGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCTAACTGC 4049 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || | | ||||||||| || | ||||||||| || |||| Sbjct 4050 TTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTA 4109 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||| || ||| ||| | ||||| | ||||| || Sbjct 4110 GCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTCTTGCCAGTG 4169 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| ||||| Sbjct 4170 AGGGTTTTTACAAAAATCTGCAT 4192 >seq3468 Length=50068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 |||| || ||||||||||| | | || | | ||||||||||||||||| || ||| Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | | | ||||||||| ||| | |||||||| || |||| ||| || | | Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | |||||| |||||| |||| ||||||| | || || ||||| || || || | Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 18316 AAATTTGCAT 18325 | || ||||| Sbjct 38287 AGATCTGCAT 38278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379063696672605