Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5375 116 7e-21 seq5580 89.7 1e-12 >seq5375 Length=21980 Score = 116 bits (128), Expect = 7e-21 Identities = 214/304 (70%), Gaps = 10/304 (3%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-TGATAC 35454 || || ||||| ||||| ||||| ||||| ||||||||||| || || ||||| | || Sbjct 1467 GGCGACTTGGGTCCCGTCTACGGCTTCCAGTGGCGTCATTTCGGCGCCGAATACTCCAAC 1408 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 || | | ||||||| | | ||| | |||||| ||| | || || | ||| | Sbjct 1407 ATGCA-TGCAGATTATAGCCAACAAGGTGTGGATCAACTGGAACACATTCTCCACACCAT 1349 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT-C 35573 | | || ||||||||| | | ||| || | | || ||||| ||| || ||| | Sbjct 1348 CAAAACCAACCCAGATGATCGCCGCATGGTTTTAAGCGCCTGGAACCCT-TGCGCCTTAC 1290 Query 35574 ACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAA 35632 || ||||| |||||||| |||||| || || || || ||||||||||| || || || Sbjct 1289 CCCAAATGGCACTTCCTCCTTGCCAC-TGCCTAGCGCAGTTTTATGTGGCCAACGGCGAG 1231 Query 35633 TTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATA 35690 | || ||||| |||||||||| ||| || ||| || || || ||||| ||||||| Sbjct 1230 CTTTCATGCCAAATGTATCAGCGTTCAGCTGATATG--GGCTTAGGGGTGCCTTTCAATA 1173 Query 35691 TTGC 35694 | || Sbjct 1172 TCGC 1169 >seq5580 Length=7482 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || || || || ||| | || || |||||||||||| | Sbjct 5765 GCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTG 5706 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| || ||| | |||| ||||| || | ||||| ||| ||||||| | ||||| Sbjct 5705 AAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAG 5646 Query 102041 GGTCTTCATCGCGACTTTGCATGC 102064 ||| | ||| |||| ||||| ||| Sbjct 5645 GGTTTGCATTGCGATTTTGCTTGC 5622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988815282180695