Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5580 280 2e-70 seq7813 116 5e-21 >seq5580 Length=7482 Score = 280 bits (310), Expect = 2e-70 Identities = 534/786 (68%), Gaps = 3/786 (0%) Strand=Plus/Plus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 || ||| || || | ||||||||||| ||||| || || || ||||| || || || Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394 ||| || || || |||||||| || || || || || ||||||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 | | ||| | | | ||||||||||| || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 ||||| || | | || || | ||| | || | |||||||| || || || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAA 33574 |||| || || ||||| | | | ||| | | |||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 ||| | || || |||||||| |||| ||||||||| | ||| | ||||| ||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 || || |||||||| | || | ||| || ||||| || ||||| || || || || || Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCT 33751 || || || || || || || |||||||| || | || ||| || |||| || | | Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 |||| ||||| || ||||||||||||||||| ||||||||||| | ||||| || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 || || || | ||| |||| | | | | |||||| ||||| ||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| |||||||||||||| ||||| ||||| || ||||||||||| | || || Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || || |||||||||| |||||| || | || |||||||| || || |||||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||| ||||| || ||||| || || | | || | ||||| || ||| ||| || | Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095 Query 34052 CCAATC 34057 |||||| Sbjct 6096 CCAATC 6101 >seq7813 Length=5936 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 |||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| || | Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105 Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63774 |||||||||| || || || ||||| || ||||| ||||| || |||| ||| | Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 ||| ||||| ||||| || | |||||| | ||| Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAACCACTTT 3199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| || || ||| ||| | || || ||||| ||| | | | | ||| | || Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || ||||| ||||| |||||||| |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | |||||||| || ||||||||||| || || || ||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTC-CCAATTCCAAAG 62563 || ||| | | |||| | | |||||| |||| || || | ||| | |||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAG-TGCGCTCCAGTCCCAAAG 1351 Query 62564 ATC 62566 ||| Sbjct 1352 ATC 1354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629340284859120