Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_003356.1
Length=42575
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 132 1e-26
seq4723 122 2e-23
>seq9686
Length=37809
Score = 132 bits (146), Expect = 1e-26
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 1641 ACCTCACACAACACTCAGCCCACGGCAGTGGCACCACACTTCAAACATTCGTTTCACAAT 1700
|| |||||| | ||||| ||||| |||||||||||| | |||||||||||||| || |
Sbjct 29485 ACTTCACACTGCGCTCAGGCCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCAC 29544
Query 1701 TTCACGGCAGTAGAAACCGTCAACATCTCGCGTCAGGTCATAGCGATTGCCGTAACGCTG 1760
||| ||||||||| | |||||| ||| ||||||||||| ||||| || || || |||||
Sbjct 29545 TTCCCGGCAGTAGTAGCCGTCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTG 29604
Query 1761 GCGTACCCATAGCTCAAACGCTTTATTCATT 1791
|| |||| | ||||| || || ||||||
Sbjct 29605 ACGCGCCCACATTTCAAAAGCCTTGTTCATT 29635
>seq4723
Length=43540
Score = 122 bits (134), Expect = 2e-23
Identities = 162/221 (73%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 1115 CCCCAAAAGCCTTGAGGTTAGGAGAGTCAGGGAACTGCGCAGCGTAATC-AAAGTTTC-- 1171
||||||| || || ||||| |||| ||||||||| | || || | |||||| |
Sbjct 7163 CCCCAAATCGCTGAAGATTAGGCGAGTTAGGGAACTGTGATGCATAGTTGAAAGTTCCAG 7104
Query 1172 -CTGTACGAATGGCAAAACATACAGATGTCCGCAGCTCTCCGGCGATCTTCCTGTTCTTG 1230
|| ||| || ||||| | ||| |||| ||||||||| ||||||||||||||
Sbjct 7103 TCTTTAC---TGCGTAAACA-ATGCTTGTTCGCAACTCTCCGGCTATCTTCCTGTTCTTT 7048
Query 1231 GCAGTGTCAGGGACACCAAGATTTTCCCTGACACGTTTACCTTTAAAATTAAACCAGATG 1290
||||||||||| || |||||| ||||||| || | ||| ||| | | ||||| | |
Sbjct 7047 GCAGTGTCAGGTACGCCAAGACTTTCCCTTACCCTGACACCGTTATAGATGAACCACAGG 6988
Query 1291 CGTAATGTGCCACCGTGGTTTTCGACGCCTGTTGGATATTT 1331
|| | || ||| ||||| || ||||| || |||||||||||
Sbjct 6987 CGCAGTGAGCCCCCGTGATTCTCGACCCCGGTTGGATATTT 6947
Score = 113 bits (124), Expect = 1e-20
Identities = 383/588 (65%), Gaps = 13/588 (2%)
Strand=Plus/Minus
Query 134 CATTGCTGTCAGTCATCCATGCTCCGTATACATTGAAAACCATCTGGGCACTTGCATGGC 193
|||| | || | ||||||| ||||| || | ||| |||||||| ||| ||||| |
Sbjct 8144 CATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCC 8085
Query 194 CCATCTGGCTGGCAATGAAGCTTGGATTTGCTCCGGCAGATAATGACCAGCACGCATAAG 253
|||| || |||||||| ||| || || ||||| | ||||||||||| || ||||
Sbjct 8084 CCATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAG 8025
Query 254 TGTGTCGTGACTGGTATGCCTTTCGATGCCTGATGCCTGCACGCTTAATGGCTGTTTCCC 313
|||| | ||||| |||| ||| | || || |||||||| || || | ||||| ||||
Sbjct 8024 TGTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCC 7965
Query 314 ATGAGTCGCCAATGGAATCTACCTTGTAGATAAAACC---TAC-CTGTTTGCTTTTTCTA 369
||| | | | ||||| || || || | || ||| | | || | ||
Sbjct 7964 ATGTTTGTCTGACAGAATCGACAGTGAAGTGATCGCCGCATACTCCGGTT-CGGGAGGTA 7906
Query 370 ACCACCTGGGGGTTGAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGT 429
| || || | || || || |||||||| || || | |||||||| ||
Sbjct 7905 A-CAGAAGGAAG--AAACACAAAGGTACATTCGTGCTTTTCCTTTTTACCATATTCCCGC 7849
Query 430 AGTTGAACCTTGATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAG- 488
|| ||||| | | ||||| ||| || |||| || || || ||| |||| ||
Sbjct 7848 AGGTGAACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGC 7789
Query 489 GACACTGATAGCGGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGG 548
| | || || || || | || || || | ||||||||| || | || | || || ||
Sbjct 7788 GCCTCT-ATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGG 7730
Query 549 TAGAGTGAACTCACCGAGTTTCGTATAATTGCGCCTGATAGTAATTGTTCCTGCTTTCAG 608
| || || | | | |||| | || | |||||| | || || || ||||||
Sbjct 7729 AACCGTAAATTTATC---CTTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAG 7673
Query 609 ATCGATATCTTCCCAGGCCAGGGAGACCAGTTCACCATGACGCATTCCTGTGTACACAGC 668
|||||||| |||||| | | ||| || || ||| | | | |||||| || ||||
Sbjct 7672 GTCGATATCCTCCCAGCCTAAAGAGCACAACTCCCCAGGTCTAAGTCCTGTATAGACAGA 7613
Query 669 CAATGACCACAGGTTTTTTGTCTGCTGATGCCGGCAAGCATCTATCAG 716
| | |||||| ||||| | |||||| ||||| ||||| || ||
Sbjct 7612 AAGCGCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAG 7565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136020398920626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |