Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq9686 132 1e-26 seq4723 122 2e-23 >seq9686 Length=37809 Score = 132 bits (146), Expect = 1e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 1641 ACCTCACACAACACTCAGCCCACGGCAGTGGCACCACACTTCAAACATTCGTTTCACAAT 1700 || |||||| | ||||| ||||| |||||||||||| | |||||||||||||| || | Sbjct 29485 ACTTCACACTGCGCTCAGGCCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCAC 29544 Query 1701 TTCACGGCAGTAGAAACCGTCAACATCTCGCGTCAGGTCATAGCGATTGCCGTAACGCTG 1760 ||| ||||||||| | |||||| ||| ||||||||||| ||||| || || || ||||| Sbjct 29545 TTCCCGGCAGTAGTAGCCGTCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTG 29604 Query 1761 GCGTACCCATAGCTCAAACGCTTTATTCATT 1791 || |||| | ||||| || || |||||| Sbjct 29605 ACGCGCCCACATTTCAAAAGCCTTGTTCATT 29635 >seq4723 Length=43540 Score = 122 bits (134), Expect = 2e-23 Identities = 162/221 (73%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 1115 CCCCAAAAGCCTTGAGGTTAGGAGAGTCAGGGAACTGCGCAGCGTAATC-AAAGTTTC-- 1171 ||||||| || || ||||| |||| ||||||||| | || || | |||||| | Sbjct 7163 CCCCAAATCGCTGAAGATTAGGCGAGTTAGGGAACTGTGATGCATAGTTGAAAGTTCCAG 7104 Query 1172 -CTGTACGAATGGCAAAACATACAGATGTCCGCAGCTCTCCGGCGATCTTCCTGTTCTTG 1230 || ||| || ||||| | ||| |||| ||||||||| |||||||||||||| Sbjct 7103 TCTTTAC---TGCGTAAACA-ATGCTTGTTCGCAACTCTCCGGCTATCTTCCTGTTCTTT 7048 Query 1231 GCAGTGTCAGGGACACCAAGATTTTCCCTGACACGTTTACCTTTAAAATTAAACCAGATG 1290 ||||||||||| || |||||| ||||||| || | ||| ||| | | ||||| | | Sbjct 7047 GCAGTGTCAGGTACGCCAAGACTTTCCCTTACCCTGACACCGTTATAGATGAACCACAGG 6988 Query 1291 CGTAATGTGCCACCGTGGTTTTCGACGCCTGTTGGATATTT 1331 || | || ||| ||||| || ||||| || ||||||||||| Sbjct 6987 CGCAGTGAGCCCCCGTGATTCTCGACCCCGGTTGGATATTT 6947 Score = 113 bits (124), Expect = 1e-20 Identities = 383/588 (65%), Gaps = 13/588 (2%) Strand=Plus/Minus Query 134 CATTGCTGTCAGTCATCCATGCTCCGTATACATTGAAAACCATCTGGGCACTTGCATGGC 193 |||| | || | ||||||| ||||| || | ||| |||||||| ||| ||||| | Sbjct 8144 CATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCC 8085 Query 194 CCATCTGGCTGGCAATGAAGCTTGGATTTGCTCCGGCAGATAATGACCAGCACGCATAAG 253 |||| || |||||||| ||| || || ||||| | ||||||||||| || |||| Sbjct 8084 CCATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAG 8025 Query 254 TGTGTCGTGACTGGTATGCCTTTCGATGCCTGATGCCTGCACGCTTAATGGCTGTTTCCC 313 |||| | ||||| |||| ||| | || || |||||||| || || | ||||| |||| Sbjct 8024 TGTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCC 7965 Query 314 ATGAGTCGCCAATGGAATCTACCTTGTAGATAAAACC---TAC-CTGTTTGCTTTTTCTA 369 ||| | | | ||||| || || || | || ||| | | || | || Sbjct 7964 ATGTTTGTCTGACAGAATCGACAGTGAAGTGATCGCCGCATACTCCGGTT-CGGGAGGTA 7906 Query 370 ACCACCTGGGGGTTGAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGT 429 | || || | || || || |||||||| || || | |||||||| || Sbjct 7905 A-CAGAAGGAAG--AAACACAAAGGTACATTCGTGCTTTTCCTTTTTACCATATTCCCGC 7849 Query 430 AGTTGAACCTTGATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAG- 488 || ||||| | | ||||| ||| || |||| || || || ||| |||| || Sbjct 7848 AGGTGAACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGC 7789 Query 489 GACACTGATAGCGGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGG 548 | | || || || || | || || || | ||||||||| || | || | || || || Sbjct 7788 GCCTCT-ATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGG 7730 Query 549 TAGAGTGAACTCACCGAGTTTCGTATAATTGCGCCTGATAGTAATTGTTCCTGCTTTCAG 608 | || || | | | |||| | || | |||||| | || || || |||||| Sbjct 7729 AACCGTAAATTTATC---CTTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAG 7673 Query 609 ATCGATATCTTCCCAGGCCAGGGAGACCAGTTCACCATGACGCATTCCTGTGTACACAGC 668 |||||||| |||||| | | ||| || || ||| | | | |||||| || |||| Sbjct 7672 GTCGATATCCTCCCAGCCTAAAGAGCACAACTCCCCAGGTCTAAGTCCTGTATAGACAGA 7613 Query 669 CAATGACCACAGGTTTTTTGTCTGCTGATGCCGGCAAGCATCTATCAG 716 | | |||||| ||||| | |||||| ||||| ||||| || || Sbjct 7612 AAGCGCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAG 7565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136020398920626