Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 185 8e-42
seq7813 91.5 1e-13
>seq5580
Length=7482
Score = 185 bits (204), Expect = 8e-42
Identities = 521/789 (66%), Gaps = 21/789 (3%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| || ||||||| ||||| | ||| || | || || ||||| ||||| |||||||
Sbjct 5322 CACGCCGCTCTTTTGGTATTCGCCCACTT-TCTTCTCAAAGAAATTCGTCTTGCCTTCTA 5380
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|| || | ||||||||| ||||| || | |||| | | || ||| |
Sbjct 5381 AGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAA 5440
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
|| || | | ||||||||||| || || ||||| ||| ||| ||| ||||
Sbjct 5441 GTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCA 5500
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || | | | ||||| | |||| | ||||| || || | |||||| || ||||
Sbjct 5501 TGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCAT 5560
Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT----AAATGTTTAAAC 11623
| ||| || ||| ||| | || | || | | | |||||||| ||
Sbjct 5561 CGCGGATGATTTGCGT---AACG-CGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTAC 5616
Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683
|| | || |||||||| ||||| ||||| ||||| | || || || || |||||
Sbjct 5617 ATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAA 5676
Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743
|| | ||||||||||| |||| || || | ||| || || | ||||| || |||||
Sbjct 5677 GTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAG 5736
Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCT----TGTT 11799
|| || || ||||| || |||||||| || | |||| || || | |||| ||||
Sbjct 5737 AAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCA-AAACCTGCTGTGTT 5795
Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859
| ||| |||||||| ||||||||| || ||||| ||||| || | ||||| ||
Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855
Query 11860 AGCGTTAAATAAATGCAT-TTTTTCT-AT-ATTATCTCTTACATATGTATCTATTAATAA 11916
||| || | |||| | ||||| || | | || | ||| || || ||||| |
Sbjct 5856 AGCTCGGAACA---GCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAG 5912
Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976
||||||||| |||||||| |||||||| || || || || || |||||||| || ||
Sbjct 5913 TGAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGC 5972
Query 11977 CTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036
|| | | ||| || || ||||| ||| | || || ||||| ||||| |||||
Sbjct 5973 TTCGGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATC 6032
Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTT 12096
| | ||||| || || | | || | | |||| ||||| || |||| ||
Sbjct 6033 AGAGGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTT 6092
Query 12097 ATCCCAATC 12105
||||||||
Sbjct 6093 TTCCCAATC 6101
>seq7813
Length=5936
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469
|| ||| | || |||||||||||||| || || ||| ||||||||||||| |||| |
Sbjct 3051 GGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGA 3110
Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529
|| || ||||| || | ||| ||||| |||||||||| || | || || |||||
Sbjct 3111 TTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTCTCATC 3170
Query 38530 AGCATATGTTGTGGTCTTTC 38549
| |||||| || || | |||
Sbjct 3171 AACATATGCTGCGGACGTTC 3190
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/208 (70%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 37045 TGAATAGAACCATTATGTAACACAATT-GTA--TTCTTTATGTCATTATTCCACATATTT 37101
||||||||||| ||||| | ||||| | | ||||| || || | | ||| | |||
Sbjct 1083 TGAATAGAACCGTTATG---CGCAATTAGCAAGTTCTTCATATCCTCAGACCAGAGATTC 1139
Query 37102 CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACT 37161
|| | | || | ||| | || |||| ||||| ||||| || ||||| || |||
Sbjct 1140 CTTTCGGTCAAATCCCGCAACAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACT 1199
Query 37162 CTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGA 37221
| || | ||| || ||| ||||| | |||||| |||||||| || | || |||||
Sbjct 1200 CGTCGCGAATAAATGTTGGACGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGT 1259
Query 37222 GATGTAGATGCAGTAGGCATTGGTGCTA 37249
| ||||| ||||||||||| || ||||
Sbjct 1260 GCCGTAGAAGCAGTAGGCATGGGAGCTA 1287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468169722623760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |