Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5580 185 8e-42 seq7813 91.5 1e-13 >seq5580 Length=7482 Score = 185 bits (204), Expect = 8e-42 Identities = 521/789 (66%), Gaps = 21/789 (3%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| || ||||||| ||||| | ||| || | || || ||||| ||||| ||||||| Sbjct 5322 CACGCCGCTCTTTTGGTATTCGCCCACTT-TCTTCTCAAAGAAATTCGTCTTGCCTTCTA 5380 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 || || | ||||||||| ||||| || | |||| | | || ||| | Sbjct 5381 AGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAA 5440 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || || | | ||||||||||| || || ||||| ||| ||| ||| |||| Sbjct 5441 GTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCA 5500 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || | | | ||||| | |||| | ||||| || || | |||||| || |||| Sbjct 5501 TGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCAT 5560 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT----AAATGTTTAAAC 11623 | ||| || ||| ||| | || | || | | | |||||||| || Sbjct 5561 CGCGGATGATTTGCGT---AACG-CGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTAC 5616 Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683 || | || |||||||| ||||| ||||| ||||| | || || || || ||||| Sbjct 5617 ATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAA 5676 Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743 || | ||||||||||| |||| || || | ||| || || | ||||| || ||||| Sbjct 5677 GTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAG 5736 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCT----TGTT 11799 || || || ||||| || |||||||| || | |||| || || | |||| |||| Sbjct 5737 AAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCA-AAACCTGCTGTGTT 5795 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | ||| |||||||| ||||||||| || ||||| ||||| || | ||||| || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 11860 AGCGTTAAATAAATGCAT-TTTTTCT-AT-ATTATCTCTTACATATGTATCTATTAATAA 11916 ||| || | |||| | ||||| || | | || | ||| || || ||||| | Sbjct 5856 AGCTCGGAACA---GCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAG 5912 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 ||||||||| |||||||| |||||||| || || || || || |||||||| || || Sbjct 5913 TGAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGC 5972 Query 11977 CTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 || | | ||| || || ||||| ||| | || || ||||| ||||| ||||| Sbjct 5973 TTCGGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATC 6032 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTT 12096 | | ||||| || || | | || | | |||| ||||| || |||| || Sbjct 6033 AGAGGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTT 6092 Query 12097 ATCCCAATC 12105 |||||||| Sbjct 6093 TTCCCAATC 6101 >seq7813 Length=5936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 || ||| | || |||||||||||||| || || ||| ||||||||||||| |||| | Sbjct 3051 GGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGA 3110 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 || || ||||| || | ||| ||||| |||||||||| || | || || ||||| Sbjct 3111 TTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTCTCATC 3170 Query 38530 AGCATATGTTGTGGTCTTTC 38549 | |||||| || || | ||| Sbjct 3171 AACATATGCTGCGGACGTTC 3190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 37045 TGAATAGAACCATTATGTAACACAATT-GTA--TTCTTTATGTCATTATTCCACATATTT 37101 ||||||||||| ||||| | ||||| | | ||||| || || | | ||| | ||| Sbjct 1083 TGAATAGAACCGTTATG---CGCAATTAGCAAGTTCTTCATATCCTCAGACCAGAGATTC 1139 Query 37102 CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACT 37161 || | | || | ||| | || |||| ||||| ||||| || ||||| || ||| Sbjct 1140 CTTTCGGTCAAATCCCGCAACAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACT 1199 Query 37162 CTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGA 37221 | || | ||| || ||| ||||| | |||||| |||||||| || | || ||||| Sbjct 1200 CGTCGCGAATAAATGTTGGACGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGT 1259 Query 37222 GATGTAGATGCAGTAGGCATTGGTGCTA 37249 | ||||| ||||||||||| || |||| Sbjct 1260 GCCGTAGAAGCAGTAGGCATGGGAGCTA 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468169722623760