Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5580 257 2e-63 seq7813 113 6e-20 >seq5580 Length=7482 Score = 257 bits (284), Expect = 2e-63 Identities = 529/786 (67%), Gaps = 3/786 (0%) Strand=Plus/Plus Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910 || ||| || || | ||||||||||| ||||| || || || ||||| || || || Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAA 35970 |||||| || || |||||||| || ||||| || || ||| ||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 35971 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 36030 | | ||| | | | |||||||| || || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 ||||| || | | || || | ||| | || | |||||||| || ||| || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 36150 || || || || | || | | | ||| | | |||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 ||| | || || |||||||| || | ||||||||| | ||| | ||||||||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 36211 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 36270 || || |||||||| | || | ||| || ||||| || ||||| ||||| || ||||| Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACT 36327 || ||||| || || || || |||||||| || | || ||| || |||| || | Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 36328 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 |||| ||||| || ||||||||||||||||| ||||||||||| | || || || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 ||| || || | ||| |||| | | | | ||| || || || ||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||||||| |||||||||||||| ||||| || || || ||||||||||| | || || Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 || || ||| |||||| |||||| || | || |||||||| || || || ||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATT 36627 ||| ||||| || ||||| || || | | || | ||||| | ||| ||| || | Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095 Query 36628 CCAATC 36633 |||||| Sbjct 6096 CCAATC 6101 >seq7813 Length=5936 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| || || ||| ||| | || || ||||| ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || ||||||||||| |||||||| |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | ||||||||| || ||||||||||| || || || ||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 || ||| | | |||| | | |||||| |||| || | ||| | ||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 65358 TC 65359 || Sbjct 1353 TC 1354 Score = 111 bits (122), Expect = 2e-19 Identities = 392/606 (65%), Gaps = 25/606 (4%) Strand=Plus/Plus Query 65617 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTA 65673 |||| |||| || ||| | || || || || || || || | ||| | |||| | Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGA--- 1804 Query 65674 CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT---ACAAACATGT 65730 ||||| || || || || |||| ||| ||| | || |||| | || ||||| | Sbjct 1805 CTTTGGTGACTTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAACATAT 1864 Query 65731 TCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 65790 ||| |||| ||||||| ||| || || |||| || | | | | ||||| | | Sbjct 1865 TCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAA 1924 Query 65791 TCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 65850 | || || || ||||| || ||||||||||| | ||||| |||||| ||| || Sbjct 1925 TTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGT 1984 Query 65851 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 65910 |||| |||||||| || || ||| | || || || ||||| | || || || ||||| | Sbjct 1985 TACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAG 2044 Query 65911 CTTTCCAGA------CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT 65964 | ||| | | | ||| | | | ||||| | | || ||||| Sbjct 2045 CCGACCAAAGTTGCTGGGCACGAACTTGACGCCGATATTTG---CCC---TCGGATTCGT 2098 Query 65965 A--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022 | | ||||| || | ||| || | |||||||| | | | ||| || || ||||| Sbjct 2099 ACTGACGGTATA-AAGC-TTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATTC 2156 Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082 | || |||||||| |||| | ||| | | || || |||||| ||||| Sbjct 2157 TGCAGGGCACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGG 2216 Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| || || ||||||||| | | || ||||| || || || || ||||| || Sbjct 2217 CATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTT 2276 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 ||||| ||||| | | || ||| |||||||||||||| || || || | |||| Sbjct 2277 GAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGCAAACGCTCC 2336 Query 66203 AGGCCG 66208 ||| || Sbjct 2337 AGGACG 2342 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 66507 ||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| || | Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105 Query 66508 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 66567 |||||||||| || || || ||||| || ||||| ||||| || |||| ||| | Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165 Query 66568 GCATTAACATGTGCTGAGGTCTTTCAAC 66595 ||| ||||| ||||| || | |||||| Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAAC 3193 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 |||||| ||||||| || || |||||||| || |||| ||||||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || |||||||| | |||||||| |||| | || || ||| ||||| | ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | |||||| ||||||||||| ||||| || || || ||||| ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 65592 C 65592 | Sbjct 1642 C 1642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657673995516360