Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq9686 268 2e-67 >seq9686 Length=37809 Score = 268 bits (296), Expect = 2e-67 Identities = 263/338 (78%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 36270 ATCATCAATACAGTTATAGAGGCTAACCAGCATGCAAAACAGCAGATCGCACTGGAGTCA 36329 |||||||| || ||| ||||| || |||||||| |||||||||||||||||||||||| Sbjct 4481 ATCATCAACACCATTACTGAGGCAAATCAGCATGCCAAACAGCAGATCGCACTGGAGTCA 4540 Query 36330 CAGAGAACCCAGGAAGATATCAAAGTGGCTGTTGCGGATGATGATTGTGCTTCACGTCA- 36388 |||| || | || |||||||||||||||||| |||||||||| || ||||| Sbjct 4541 CAGAATGCCGCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTG---CTCTCGTCAG 4597 Query 36389 --TGTGCCTGCTGCCGCTGCTGACCGGTTGCGGAAGTACGCGAACAGTTTACGTACCGAT 36446 |||||||| ||| |||||| ||||| ||||| ||||||| ||||||||||| || Sbjct 4598 CTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTACGTGCCAGC 4657 Query 36447 TCCGGCGGTACCGTTGCCAGCAAGCCTGACTACTGAAACTCCCCAGCCAGTCATTCCCGA 36506 || | ||| ||| | || ||| ||||||| ||||||| ||||||||| ||| |||| Sbjct 4658 ACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACGATTTCCGA 4717 Query 36507 GCCGCTGACCTATGGGGCCAGTCTGGATCTGAATGTGAGCCTGCTTTCGGCGTTGGGACA 36566 |||||| | ||||||| |||||||||||||||||||| | || | | || ||||| || Sbjct 4718 TCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTGGCTGCATTGGGGCA 4777 Query 36567 ATGCAATATTGACAAAGCGGGGATTCGAAGTATCGAGA 36604 |||||| || || || | ||||| || ||||||| Sbjct 4778 GTGCAATGCCGATAAGGCAAGCATTCGGAGCATCGAGA 4815 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 16905 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 16964 |||||||| | || |||||| | || | || || || ||||||||| |||||||||| Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192 Query 16965 TTGGGAGAAGCGGCAAAACGGGATATAGGGACAGGGGCAAATCAGATACCTGATATG 17021 ||| ||| ||||||||| | ||| | || || |||||||| || || || || ||| Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118429872685528