Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 268 2e-67
>seq9686
Length=37809
Score = 268 bits (296), Expect = 2e-67
Identities = 263/338 (78%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 36270 ATCATCAATACAGTTATAGAGGCTAACCAGCATGCAAAACAGCAGATCGCACTGGAGTCA 36329
|||||||| || ||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 4481 ATCATCAACACCATTACTGAGGCAAATCAGCATGCCAAACAGCAGATCGCACTGGAGTCA 4540
Query 36330 CAGAGAACCCAGGAAGATATCAAAGTGGCTGTTGCGGATGATGATTGTGCTTCACGTCA- 36388
|||| || | || |||||||||||||||||| |||||||||| || |||||
Sbjct 4541 CAGAATGCCGCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTG---CTCTCGTCAG 4597
Query 36389 --TGTGCCTGCTGCCGCTGCTGACCGGTTGCGGAAGTACGCGAACAGTTTACGTACCGAT 36446
|||||||| ||| |||||| ||||| ||||| ||||||| ||||||||||| ||
Sbjct 4598 CTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTACGTGCCAGC 4657
Query 36447 TCCGGCGGTACCGTTGCCAGCAAGCCTGACTACTGAAACTCCCCAGCCAGTCATTCCCGA 36506
|| | ||| ||| | || ||| ||||||| ||||||| ||||||||| ||| ||||
Sbjct 4658 ACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACGATTTCCGA 4717
Query 36507 GCCGCTGACCTATGGGGCCAGTCTGGATCTGAATGTGAGCCTGCTTTCGGCGTTGGGACA 36566
|||||| | ||||||| |||||||||||||||||||| | || | | || ||||| ||
Sbjct 4718 TCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTGGCTGCATTGGGGCA 4777
Query 36567 ATGCAATATTGACAAAGCGGGGATTCGAAGTATCGAGA 36604
|||||| || || || | ||||| || |||||||
Sbjct 4778 GTGCAATGCCGATAAGGCAAGCATTCGGAGCATCGAGA 4815
Score = 86.0 bits (94), Expect = 1e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 16905 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 16964
|||||||| | || |||||| | || | || || || ||||||||| ||||||||||
Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192
Query 16965 TTGGGAGAAGCGGCAAAACGGGATATAGGGACAGGGGCAAATCAGATACCTGATATG 17021
||| ||| ||||||||| | ||| | || || |||||||| || || || || |||
Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118429872685528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |