Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5580 275 9e-69 seq7813 123 4e-23 >seq5580 Length=7482 Score = 275 bits (304), Expect = 9e-69 Identities = 533/786 (68%), Gaps = 3/786 (0%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || ||| || || | ||||||||||| ||||| || || || ||||| || || || Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 ||| || || || |||||||| || || || || || ||| ||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 49773 TCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACA 49832 | | ||| | | | || ||||| || || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 ||||| || | | || || | ||| | || | |||||||| || || || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952 ||||| || || ||||| | | | ||| | | |||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 ||| | || || |||||||| |||| ||||||||| | ||| || ||||||||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 || || |||||||| | || | ||| || ||||| || ||||| ||||| || ||||| Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCT 50129 || || || || || || || |||||||| | | || ||| || ||| || | | Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 |||| ||||| || ||||||||||||||||| ||||||||||| | ||||| || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 || || || | ||| |||| | | | | |||||| ||||| ||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| |||||||||||||| ||||| ||||| || ||||||||||| | || || Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || || |||||||||| |||||| || | || |||||||| || || || ||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 ||| ||||| || ||||| || || | | || || ||||| | ||| ||| || | Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095 Query 50430 CCAATC 50435 |||||| Sbjct 6096 CCAATC 6101 >seq7813 Length=5936 Score = 123 bits (136), Expect = 4e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 |||||| |||||| |||||| ||||||||||| |||||||||||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 ||||||||||| | ||||||||||||| | || || ||| ||||| | ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 || ||||| | | |||||| ||||||||||| ||||| || || || ||||| ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 79471 C 79471 | Sbjct 1642 C 1642 Score = 114 bits (126), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 ||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| |||| Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACAC 80446 |||||||||| || || || ||||| || ||||| ||||| || || | ||| | Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGA 80504 ||| ||||| ||||| || | |||||| | || | | ||||||||| ||||| Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAACCACTTTTCCACCGACTTTCAACAAATAAGA 3223 Score = 104 bits (114), Expect = 3e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| || || ||| ||| | || || ||||| ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || ||||||||||| |||||||| |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || ||||| || ||||||||||| || || || || || ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 || ||| | | |||| | |||||| |||| || | ||| ||||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTG 79268 ||| || |||||||| | ||| || || Sbjct 1353 TCACTTGGAGTCACATTCCACATATCGTACTG 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717724451011560