Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5580 167 2e-36 >seq5580 Length=7482 Score = 167 bits (184), Expect = 2e-36 Identities = 551/852 (65%), Gaps = 26/852 (3%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTT----GTTAGAAATAACGCCCA 13366 ||| ||||| |||| |||| |||||| | | |||| | ||| || ||||| Sbjct 5274 CTAGAAATCCGCATCCAATGTAAAAACTT----GGCTTTCGCGGCTAGCCATCACGCCGC 5329 Query 13367 TTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 | ||||| ||||| | ||| | || ||||| || || || || ||||| | || || | Sbjct 5330 TCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGT 5389 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATA 13486 |||||||||| ||||| || ||| || | | | || ||| ||||| | | Sbjct 5390 TTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCA 5449 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | | | || || | |||||||| || || ||| |||||||| ||||| || | | Sbjct 5450 AGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCA 5509 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||| || | || || || ||||||| |||||| |||||| ||| || | Sbjct 5510 TGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGA 5569 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 13662 | | ||| | || | || | | || | |||||| | || | || Sbjct 5570 TTTGCGTAACGCGAGC----GACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAA 5625 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 |||||||| ||||| | ||||| || | ||| || ||||| ||||| || | || Sbjct 5626 GCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCG 5685 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 |||||||| |||| || || | ||| || || | || || || || || || || || Sbjct 5686 GGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATA 5745 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 ||||| || || ||||| || || | ||| || |||| |||| | |||| || ||| Sbjct 5746 CCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATC 5805 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| ||||| || | || || || | | || | |||||||| || ||| Sbjct 5806 CATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAAC 5865 Query 13903 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATT 13959 | | ||||| | || | | || || || || || |||| | ||||||| Sbjct 5866 AGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA---ATACATT 5922 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACC 14017 || || || |||||||| || || ||||| || || || ||||| | ||||| | ||| Sbjct 5923 TCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACC 5982 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || || || | ||||| || ||||||||||||| ||||| |||||| || | Sbjct 5983 --TGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGG 6040 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| || ||||| | || | | |||| | || ||| || | |||| ||||| Sbjct 6041 CAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCAAT 6100 Query 14138 CGGCTAAATCCT 14149 || ||||||| Sbjct 6101 CGCTCAAATCCT 6112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478226095495560