Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5580 262 5e-65 seq7813 118 1e-21 >seq5580 Length=7482 Score = 262 bits (290), Expect = 5e-65 Identities = 530/786 (67%), Gaps = 3/786 (0%) Strand=Plus/Plus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 || ||| || || | ||||||||||| ||||| || || || ||||| ||||| || Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 41877 ||| || || || |||||||| || || || || || ||| ||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 41878 TCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACA 41937 | | ||| | | | ||||||| ||| || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 ||||| || | | || || | ||| | || | |||||||| || ||| || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 42057 || || || || | || | | | ||| | | |||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117 ||| | || || |||||||| |||| |||||| || | ||| | ||||||||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177 || || |||||||| | || | ||| || ||||| || || || ||||| || ||||| Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT- 42236 || || || || || || || |||||||| || | || ||| || |||| || ||| Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 42237 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 || ||||| || ||||||||||||||||| ||||||||||| | ||||| || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 || || || | ||| |||| | | | | ||| || ||||| ||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||| |||||||||||||| ||||| ||||| || ||||||||||| | || || Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || |||||| |||||| |||||| || | || ||||| || || || || ||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||| ||||| || ||||| || || | | || | ||||| || ||| |||| || | Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095 Query 42535 CCAATC 42540 |||||| Sbjct 6096 CCAATC 6101 >seq7813 Length=5936 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| ||||||| || || ||||| ||||| |||| ||||||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 ||||| ||||| | ||||||||||||| | || || ||| ||||| | | ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | |||||| ||||||||||| ||||| ||||| || ||||| ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 71554 CTGTG 71558 | ||| Sbjct 1642 CGGTG 1646 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || |||| ||| || | ||| | || | |||| ||| || || || ||||||||||| Sbjct 689 TTATCCACTGTGAATTTAATCGCTGATGCCGCGGGTTTGGTGCGAAGGTAGTACATGCCA 748 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| | || || |||| | | |||||||| ||||| |||| ||| | || Sbjct 749 GTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTGGGC 808 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||||||||| || | ||||| ||||| || ||||| ||||| ||||| || | | Sbjct 809 TCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCCGAC 868 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 ||||| |||| || ||| | ||| ||||| | ||||| || Sbjct 869 ATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTA 912 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 ||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| |||| Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105 Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACAC 72529 |||||||||| || || || ||||| || ||||| || || || || | ||| | Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165 Query 72530 GCATTAACATATGCTGAGGTCTTTCAAC 72557 ||| ||||||||||| || | |||||| Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAAC 3193 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||| || || || ||||| | | || || || || ||| ||| | || || Sbjct 1082 CTGAATAGAACCGTTATGCGCAATTAGCAAGTTCTTCATATCCTCAGACCAGAGATTCCT 1141 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||||| ||| | | | | ||| |||| || ||||||||||| |||||||| |||| Sbjct 1142 TTCGGTCAAATCCCGCAACAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACTCG 1201 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || | ||||| || ||||| | ||| | |||||||| || ||||||||||| || Sbjct 1202 TCGCGAATAAATGTTGGACGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGTGC 1261 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 || || ||||| ||||| || || | ||||| Sbjct 1262 CGTAGAAGCAGTAGGCATGGGAGCTAACAATA 1293 Score = 98.7 bits (108), Expect = 1e-15 Identities = 375/585 (64%), Gaps = 13/585 (2%) Strand=Plus/Plus Query 71579 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTA 71635 |||| |||| || ||| | || || || || || || || | ||| | |||| | Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGA--- 1804 Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT---ACAAACACGT 71692 ||||| || || || || |||| ||| ||| | || |||| | || |||| | Sbjct 1805 CTTTGGTGACTTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAACATAT 1864 Query 71693 TCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAA 71752 ||| |||| ||||||| ||| || || |||| || | | | || ||||| | || Sbjct 1865 TCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAA 1924 Query 71753 TTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 71812 |||| || || ||||| || ||||||||||| | ||||| |||||| ||| || Sbjct 1925 TTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGT 1984 Query 71813 TACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 71872 |||| |||||||| || || || | || || || ||||| | || || || ||||| | Sbjct 1985 TACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAG 2044 Query 71873 CTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTG 71932 | ||| | | || | | | | ||| | || |||||| || Sbjct 2045 CCGACCAAAGTTGCTGGGCACGAACTTGACGCCGATATTTGCCCTCGGATTCGTACTGAC 2104 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 ||||| ||| || | |||||||| | | || || || ||||| || | Sbjct 2105 GGTATAAAGCTTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATTCTGCAGGGC 2164 Query 71993 ACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||||||| |||| | | | || ||| || || |||||| ||||| ||||| Sbjct 2165 ACATCAAACTCCACATTTCGT--TCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCA 2222 Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110 || || ||||| ||| | | || || || || || || || ||||| || ||||| Sbjct 2223 CAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATC 2282 Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||||| | | || |||| |||||||||||||| || || || Sbjct 2283 AAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670630568768040