Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 262 5e-65
seq7813 118 1e-21
>seq5580
Length=7482
Score = 262 bits (290), Expect = 5e-65
Identities = 530/786 (67%), Gaps = 3/786 (0%)
Strand=Plus/Plus
Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817
|| ||| || || | ||||||||||| ||||| || || || ||||| ||||| ||
Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375
Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 41877
||| || || || |||||||| || || || || || ||| ||||| || | |
Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435
Query 41878 TCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACA 41937
| | ||| | | | ||||||| ||| || || || |||||||| |||||
Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495
Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997
||||| || | | || || | ||| | || | |||||||| || ||| ||
Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555
Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 42057
|| || || || | || | | | ||| | | |||||||| |
Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615
Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117
||| | || || |||||||| |||| |||||| || | ||| | |||||||||||
Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675
Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177
|| || |||||||| | || | ||| || ||||| || || || ||||| || |||||
Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT- 42236
|| || || || || || || |||||||| || | || ||| || |||| || |||
Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795
Query 42237 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294
|| ||||| || ||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855
Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354
|| || || | ||| |||| | | | | ||| || ||||| |||||
Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915
Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414
||||||||| |||||||||||||| ||||| ||||| || ||||||||||| | || ||
Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975
Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474
|| |||||| |||||| |||||| || | || ||||| || || || || |||
Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035
Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534
||| ||||| || ||||| || || | | || | ||||| || ||| |||| || |
Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095
Query 42535 CCAATC 42540
||||||
Sbjct 6096 CCAATC 6101
>seq7813
Length=5936
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|||||| ||||||| || || ||||| ||||| |||| ||||||| ||||| ||
Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
||||| ||||| | ||||||||||||| | || || ||| ||||| | | |||
Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| ||||| | | |||||| ||||||||||| ||||| ||||| || ||||| |||
Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641
Query 71554 CTGTG 71558
| |||
Sbjct 1642 CGGTG 1646
Score = 111 bits (122), Expect = 2e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851
|| |||| ||| || | ||| | || | |||| ||| || || || |||||||||||
Sbjct 689 TTATCCACTGTGAATTTAATCGCTGATGCCGCGGGTTTGGTGCGAAGGTAGTACATGCCA 748
Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911
||||| | || || |||| | | |||||||| ||||| |||| ||| | ||
Sbjct 749 GTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTGGGC 808
Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971
|| |||||||||| || | ||||| ||||| || ||||| ||||| ||||| || | |
Sbjct 809 TCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCCGAC 868
Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015
||||| |||| || ||| | ||| ||||| | ||||| ||
Sbjct 869 ATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTA 912
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| ||||
Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105
Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACAC 72529
|||||||||| || || || ||||| || ||||| || || || || | ||| |
Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165
Query 72530 GCATTAACATATGCTGAGGTCTTTCAAC 72557
||| ||||||||||| || | ||||||
Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAAC 3193
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108
|||||| || || || ||||| | | || || || || ||| ||| | || ||
Sbjct 1082 CTGAATAGAACCGTTATGCGCAATTAGCAAGTTCTTCATATCCTCAGACCAGAGATTCCT 1141
Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168
||||| ||| | | | | ||| |||| || ||||||||||| |||||||| ||||
Sbjct 1142 TTCGGTCAAATCCCGCAACAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACTCG 1201
Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228
|| | ||||| || ||||| | ||| | |||||||| || ||||||||||| ||
Sbjct 1202 TCGCGAATAAATGTTGGACGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGTGC 1261
Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260
|| || ||||| ||||| || || | |||||
Sbjct 1262 CGTAGAAGCAGTAGGCATGGGAGCTAACAATA 1293
Score = 98.7 bits (108), Expect = 1e-15
Identities = 375/585 (64%), Gaps = 13/585 (2%)
Strand=Plus/Plus
Query 71579 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTA 71635
|||| |||| || ||| | || || || || || || || | ||| | |||| |
Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGA--- 1804
Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT---ACAAACACGT 71692
||||| || || || || |||| ||| ||| | || |||| | || |||| |
Sbjct 1805 CTTTGGTGACTTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAACATAT 1864
Query 71693 TCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAA 71752
||| |||| ||||||| ||| || || |||| || | | | || ||||| | ||
Sbjct 1865 TCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAA 1924
Query 71753 TTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 71812
|||| || || ||||| || ||||||||||| | ||||| |||||| ||| ||
Sbjct 1925 TTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGT 1984
Query 71813 TACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 71872
|||| |||||||| || || || | || || || ||||| | || || || ||||| |
Sbjct 1985 TACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAG 2044
Query 71873 CTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTG 71932
| ||| | | || | | | | ||| | || |||||| ||
Sbjct 2045 CCGACCAAAGTTGCTGGGCACGAACTTGACGCCGATATTTGCCCTCGGATTCGTACTGAC 2104
Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992
||||| ||| || | |||||||| | | || || || ||||| || |
Sbjct 2105 GGTATAAAGCTTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATTCTGCAGGGC 2164
Query 71993 ACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCA 72050
||||||| |||| | | | || ||| || || |||||| ||||| |||||
Sbjct 2165 ACATCAAACTCCACATTTCGT--TCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCA 2222
Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110
|| || ||||| ||| | | || || || || || || || ||||| || |||||
Sbjct 2223 CAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATC 2282
Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155
||||| | | || |||| |||||||||||||| || || ||
Sbjct 2283 AAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670630568768040
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