Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5580 138 2e-27 seq7813 95.1 2e-14 >seq5580 Length=7482 Score = 138 bits (152), Expect = 2e-27 Identities = 475/736 (65%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| ||||||| |||||||||| ||| ||||| || ||||| || || || || ||| Sbjct 6059 CACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGA 6000 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | ||||| || |||| || | | || || ||||| ||||| || || Sbjct 5999 TTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATG 5940 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || ||| | || || |||||||| || | || |||| || || || ||| | Sbjct 5939 GAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCCGATCTCCTGAT 5880 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||||| ||||| || || ||||| || | || | | || || ||||| | Sbjct 5879 GAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGAT 5820 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| || |||||| |||| ||| | | || || || | | || || Sbjct 5819 TGGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTT 5760 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || ||||| ||||| || || || || || |||||| |||| || ||||| |||||| Sbjct 5759 GCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAG 5700 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 | || | |||||||| || || |||||| | || || || |||||||| | Sbjct 5699 AGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTG 5640 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGC 125618 || || || ||||| || ||| ||| || || ||| || | || || Sbjct 5639 CATTGCGATTTTGCTTGCCTTATGTA---CAAACATTTG-GTCAA-----CAAACCCGGC 5589 Query 125619 GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACC 125678 | | || | | || | |||||| ||| ||||| ||||| || | ||| Sbjct 5588 GTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTATAGAGCAAGAATTCTTGACC 5529 Query 125679 GAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAG 125738 || | ||||||| |||| ||||||||||||| | | ||| ||||||| ||| Sbjct 5528 GATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATTTGATGAAACAGTACATTGAG 5469 Query 125739 TTTGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAGATTTACAACGCCAAGAA 125797 || || ||||| || || || || | || | || || |||||||||||| || | || Sbjct 5468 TTCGTCGCAGACCGGCTCTTGGTCGAACTTCAATGTCC-CAAGATTTACAATTCCGAAAA 5410 Query 125798 TCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAA 125857 || || || || ||| | ||| || |||| || ||||| || || || |||||||| Sbjct 5409 CCCTTTCGACTTTATGGAAAACATTTCCTTAGAAGGCAAGACGAATTTCTTTGAGAAGAA 5350 Query 125858 GGTCAGCGAGTACAAA 125873 || |||| ||| || Sbjct 5349 AGTGGGCGAATACCAA 5334 >seq7813 Length=5936 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAAC 97262 || || || || || || || ||||| |||||||||||| || || || || || Sbjct 2030 CAAGTGGAAACGGGCACGCCTTACATCCTCTACAAGGATGCCTGTAACCGAAAATCTAAT 1971 Query 97263 CAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || | || |||| |||||||| |||| |||||||| ||||||||||| || || || Sbjct 1970 CAGCAAAACCTGGGAACCATCAAATGCTCGAATCTGTGTACGGAAATTGTCGAATATTCC 1911 Query 97323 TCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 ||||||||||| | || || ||| | ||||||| Sbjct 1910 TCTCCGGACGAAATAGCTGTCTGCAATTTGGCATC 1876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740497579022040