Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 138 2e-27
seq7813 95.1 2e-14
>seq5580
Length=7482
Score = 138 bits (152), Expect = 2e-27
Identities = 475/736 (65%), Gaps = 11/736 (1%)
Strand=Plus/Minus
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| ||||||| |||||||||| ||| ||||| || ||||| || || || || |||
Sbjct 6059 CACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGA 6000
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
|| | ||||| || |||| || | | || || ||||| ||||| || ||
Sbjct 5999 TTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATG 5940
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318
|| ||| | || || |||||||| || | || |||| || || || ||| |
Sbjct 5939 GAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCCGATCTCCTGAT 5880
Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378
||||| ||||| || || ||||| || | || | | || || ||||| |
Sbjct 5879 GAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGAT 5820
Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438
|||| || |||||| |||| ||| | | || || || | | || ||
Sbjct 5819 TGGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTT 5760
Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498
|| ||||| ||||| || || || || || |||||| |||| || ||||| ||||||
Sbjct 5759 GCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAG 5700
Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558
| || | |||||||| || || |||||| | || || || |||||||| |
Sbjct 5699 AGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTG 5640
Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGC 125618
|| || || ||||| || ||| ||| || || ||| || | || ||
Sbjct 5639 CATTGCGATTTTGCTTGCCTTATGTA---CAAACATTTG-GTCAA-----CAAACCCGGC 5589
Query 125619 GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACC 125678
| | || | | || | |||||| ||| ||||| ||||| || | |||
Sbjct 5588 GTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTATAGAGCAAGAATTCTTGACC 5529
Query 125679 GAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAG 125738
|| | ||||||| |||| ||||||||||||| | | ||| ||||||| |||
Sbjct 5528 GATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATTTGATGAAACAGTACATTGAG 5469
Query 125739 TTTGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAGATTTACAACGCCAAGAA 125797
|| || ||||| || || || || | || | || || |||||||||||| || | ||
Sbjct 5468 TTCGTCGCAGACCGGCTCTTGGTCGAACTTCAATGTCC-CAAGATTTACAATTCCGAAAA 5410
Query 125798 TCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAA 125857
|| || || || ||| | ||| || |||| || ||||| || || || ||||||||
Sbjct 5409 CCCTTTCGACTTTATGGAAAACATTTCCTTAGAAGGCAAGACGAATTTCTTTGAGAAGAA 5350
Query 125858 GGTCAGCGAGTACAAA 125873
|| |||| ||| ||
Sbjct 5349 AGTGGGCGAATACCAA 5334
>seq7813
Length=5936
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAAC 97262
|| || || || || || || ||||| |||||||||||| || || || || ||
Sbjct 2030 CAAGTGGAAACGGGCACGCCTTACATCCTCTACAAGGATGCCTGTAACCGAAAATCTAAT 1971
Query 97263 CAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322
|| | || |||| |||||||| |||| |||||||| ||||||||||| || || ||
Sbjct 1970 CAGCAAAACCTGGGAACCATCAAATGCTCGAATCTGTGTACGGAAATTGTCGAATATTCC 1911
Query 97323 TCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357
||||||||||| | || || ||| | |||||||
Sbjct 1910 TCTCCGGACGAAATAGCTGTCTGCAATTTGGCATC 1876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740497579022040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |