Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 598 2e-166
seq9686 304 5e-78
>seq4723
Length=43540
Score = 598 bits (662), Expect = 2e-166
Identities = 677/911 (74%), Gaps = 15/911 (2%)
Strand=Plus/Minus
Query 4627 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 4686
||||| |||||| |||||| || || || |||||||| || ||||| ||||| || |
Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227
Query 4687 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 4746
||||||| ||||||||||||||||||||| |||||||| || || || || || ||||
Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167
Query 4747 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 4806
||||| || | |||||| || ||||| |||||||| || ||||||||| ||||||| |
Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107
Query 4807 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCT 4866
|||| || | ||||||||||||||| |||||||||||||| || || || |||||||
Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047
Query 4867 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 4926
| || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || |
Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987
Query 4927 GGCCGTTACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 4986
|||| ||| |||||| | || || ||||||||||| ||||||||| | |||||||
Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927
Query 4987 GATAGATGATCGGGGATTCAGTAACATTAACGCCGGAAGTGAACTCAAAGAGGGTTCTGG 5046
| ||| |||||| || || | || ||||||||| |||||||| || ||||||| |
Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867
Query 5047 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACAC 5106
|||| | ||| | ||||| ||||| ||||| | ||| |||||||||||||| | || |
Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807
Query 5107 CGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 5166
||||||| || || || ||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747
Query 5167 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 5226
| || ||||| || || | || |||||| ||||| || || || || |||||||| |
Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687
Query 5227 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACATCGATCCCGGTACGCT 5286
| | | ||||| || ||||| || || ||||| | | | || || || || || ||
Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627
Query 5287 GCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAA 5346
||||||||| || ||||||||||||| ||| ||||| || |||||
Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582
Query 5347 TCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 5406
|| |||||||| || |||||| || |||| || || | ||||| ||| ||
Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522
Query 5407 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 5466
|| || | || |||||||| | | ||| ||||||| || |||| || || || ||
Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462
Query 5467 CAGAGTGTTAATCTCCTGCATGGTTTCATTGTTAACCGGAGTGATGTCGCGTTCCGGCTG 5526
|| | || | || | || ||||| || |||| | | ||||||||| |||||
Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402
Query 5527 ACGTTCTGCAG 5537
||| || ||||
Sbjct 1401 ACGCTCGGCAG 1391
Score = 89.7 bits (98), Expect = 2e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 134 ATTGTTGTCTTTCATCCATGCTCCGTAAACATTGAATACCATTTGTGCGTTTGTGTGGCC 193
||| || ||| ||||||| |||||||| | ||||||||| || || | | || ||
Sbjct 8143 ATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCCC 8084
Query 194 CATCTGGCTTGCGATAAAACTAGGATTAGCTCCAGCGGCAAGTGACCAGCATGCATAAGT 253
||| || || || || || || || || || | | ||||||||| || |||||
Sbjct 8083 CATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGT 8024
Query 254 ATGCCTGGATTGGTACGATTTTCTGTGTCTCAGACCTGCGCGTTTTA 300
|||||||| || || || || |||||||| | |||||||||||||
Sbjct 8023 GTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTA 7977
>seq9686
Length=37809
Score = 304 bits (336), Expect = 5e-78
Identities = 359/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 18404 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 18463
||||| || |||| ||||| | || |||||||| || ||||| || ||||| |||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 18464 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 18523
|||||| | ||| |||| ||||| || |||||||| ||||| | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 18524 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 18583
|| || |||||||||||||| ||||| |||||| | | |||||||| || || | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 18584 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 18643
|||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 18644 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 18703
|| ||||||||||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 18704 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 18763
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 18764 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 18822
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 18823 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 18882
|||||||| |||||||| | | ||||| || |||||||||| || | | ||| |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628
Query 18883 TAA 18885
|||
Sbjct 629 TAA 631
Score = 104 bits (114), Expect = 9e-18
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1656 CCGCGGCAGTGGCACCACACTTCAAACATTCGTCTCACAATTTCGCGACAGTAGAAACCG 1715
|| || |||||||||||| | |||||||||||| | || | ||| || |||||| | |||
Sbjct 29504 CCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCACTTCCCGGCAGTAGTAGCCG 29563
Query 1716 TCAACATCTCGCGTCAGGTCATAGCGACTGCCATAACGCTGGTGGACCCATAGTTCAAAT 1775
||| ||| ||||||||||| ||||| | ||||| ||||| | |||| | ||||||
Sbjct 29564 TCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTGACGCGCCCACATTTCAAAA 29623
Query 1776 GCTTTATTCA 1785
|| || ||||
Sbjct 29624 GCCTTGTTCA 29633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185121022505416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |