Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq4723 598 2e-166 seq9686 304 5e-78 >seq4723 Length=43540 Score = 598 bits (662), Expect = 2e-166 Identities = 677/911 (74%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 4627 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 4686 ||||| |||||| |||||| || || || |||||||| || ||||| ||||| || | Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227 Query 4687 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 4746 ||||||| ||||||||||||||||||||| |||||||| || || || || || |||| Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167 Query 4747 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 4806 ||||| || | |||||| || ||||| |||||||| || ||||||||| ||||||| | Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107 Query 4807 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCT 4866 |||| || | ||||||||||||||| |||||||||||||| || || || ||||||| Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047 Query 4867 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 4926 | || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || | Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987 Query 4927 GGCCGTTACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 4986 |||| ||| |||||| | || || ||||||||||| ||||||||| | ||||||| Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927 Query 4987 GATAGATGATCGGGGATTCAGTAACATTAACGCCGGAAGTGAACTCAAAGAGGGTTCTGG 5046 | ||| |||||| || || | || ||||||||| |||||||| || ||||||| | Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867 Query 5047 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACAC 5106 |||| | ||| | ||||| ||||| ||||| | ||| |||||||||||||| | || | Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807 Query 5107 CGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 5166 ||||||| || || || ||||||||||||||||| |||||||||||||| | |||||||| Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747 Query 5167 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 5226 | || ||||| || || | || |||||| ||||| || || || || |||||||| | Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687 Query 5227 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACATCGATCCCGGTACGCT 5286 | | | ||||| || ||||| || || ||||| | | | || || || || || || Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627 Query 5287 GCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAA 5346 ||||||||| || ||||||||||||| ||| ||||| || ||||| Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582 Query 5347 TCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 5406 || |||||||| || |||||| || |||| || || | ||||| ||| || Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522 Query 5407 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 5466 || || | || |||||||| | | ||| ||||||| || |||| || || || || Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462 Query 5467 CAGAGTGTTAATCTCCTGCATGGTTTCATTGTTAACCGGAGTGATGTCGCGTTCCGGCTG 5526 || | || | || | || ||||| || |||| | | ||||||||| ||||| Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402 Query 5527 ACGTTCTGCAG 5537 ||| || |||| Sbjct 1401 ACGCTCGGCAG 1391 Score = 89.7 bits (98), Expect = 2e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 134 ATTGTTGTCTTTCATCCATGCTCCGTAAACATTGAATACCATTTGTGCGTTTGTGTGGCC 193 ||| || ||| ||||||| |||||||| | ||||||||| || || | | || || Sbjct 8143 ATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCCC 8084 Query 194 CATCTGGCTTGCGATAAAACTAGGATTAGCTCCAGCGGCAAGTGACCAGCATGCATAAGT 253 ||| || || || || || || || || || | | ||||||||| || ||||| Sbjct 8083 CATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGT 8024 Query 254 ATGCCTGGATTGGTACGATTTTCTGTGTCTCAGACCTGCGCGTTTTA 300 |||||||| || || || || |||||||| | ||||||||||||| Sbjct 8023 GTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTA 7977 >seq9686 Length=37809 Score = 304 bits (336), Expect = 5e-78 Identities = 359/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 18404 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 18463 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 18464 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 18523 |||||| | ||| |||| ||||| || |||||||| ||||| | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 18524 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 18583 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 18584 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 18643 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 18644 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 18703 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 18704 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 18763 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 18764 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 18822 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 18823 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 18882 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 18883 TAA 18885 ||| Sbjct 629 TAA 631 Score = 104 bits (114), Expect = 9e-18 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1656 CCGCGGCAGTGGCACCACACTTCAAACATTCGTCTCACAATTTCGCGACAGTAGAAACCG 1715 || || |||||||||||| | |||||||||||| | || | ||| || |||||| | ||| Sbjct 29504 CCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCACTTCCCGGCAGTAGTAGCCG 29563 Query 1716 TCAACATCTCGCGTCAGGTCATAGCGACTGCCATAACGCTGGTGGACCCATAGTTCAAAT 1775 ||| ||| ||||||||||| ||||| | ||||| ||||| | |||| | |||||| Sbjct 29564 TCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTGACGCGCCCACATTTCAAAA 29623 Query 1776 GCTTTATTCA 1785 || || |||| Sbjct 29624 GCCTTGTTCA 29633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185121022505416