Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 172 5e-38
>seq5580
Length=7482
Score = 172 bits (190), Expect = 5e-38
Identities = 479/727 (66%), Gaps = 16/727 (2%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| ||||||| ||| | || ||||| || || || || |||||||| ||||| |||
Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---ACACCCTAATTCTAGT 12976
|||||||| |||||||| |||||| ||| ||| | || ||| | ||| |
Sbjct 5392 TCCATAAAGTCGAAAGG-GTTTTCG--GAATTGTAAATCTTGGGACATTGAAGTTCGACC 5448
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
|| | | ||| || || ||||| |||||||||||||| |||||||||||||| || |
Sbjct 5449 AAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGC 5508
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
| ||| || | ||| || || || || | || |||||| | || || ||| |
Sbjct 5509 ATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATG 5568
Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACA 13152
|| | | || || | | | || |||| | | ||| || |||| | ||
Sbjct 5569 AT-TTGCGTAACGCGAGC---GACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCA 5624
Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212
|||||||| || ||||| || || || | || |||||||| ||||| || |||||
Sbjct 5625 AGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACC 5684
Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272
||||| | |||| || || | ||| || || | ||||| || || || ||||| ||
Sbjct 5685 GGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAAT 5744
Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCA-CCATACGTACTATTTTTACTCTCTA 13331
|| || || |||||||| || || | | ||| | | || | || | || | |
Sbjct 5745 ACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC-AGAGA 5803
Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391
|||| || |||||| | || || | || || || | |||| || || |
Sbjct 5804 TCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGA 5863
Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451
| | | ||| || | | | |||||||| || || || | ||||||||
Sbjct 5864 ACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTT 5923
Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511
| |||||||| |||||||| || || ||||| || || ||||| | || || | ||||
Sbjct 5924 CGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCT 5983
Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571
| ||||| | ||||| || | |||||||| || || || || ||| || ||||
Sbjct 5984 GCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAA 6043
Query 13572 aaaaaGC 13578
| |||||
Sbjct 6044 AGAAAGC 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430663940235858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |