Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5580 172 5e-38 >seq5580 Length=7482 Score = 172 bits (190), Expect = 5e-38 Identities = 479/727 (66%), Gaps = 16/727 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| ||||||| ||| | || ||||| || || || || |||||||| ||||| ||| Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---ACACCCTAATTCTAGT 12976 |||||||| |||||||| |||||| ||| ||| | || ||| | ||| | Sbjct 5392 TCCATAAAGTCGAAAGG-GTTTTCG--GAATTGTAAATCTTGGGACATTGAAGTTCGACC 5448 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || | | ||| || || ||||| |||||||||||||| |||||||||||||| || | Sbjct 5449 AAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGC 5508 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | ||| || | ||| || || || || | || |||||| | || || ||| | Sbjct 5509 ATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATG 5568 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACA 13152 || | | || || | | | || |||| | | ||| || |||| | || Sbjct 5569 AT-TTGCGTAACGCGAGC---GACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCA 5624 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 |||||||| || ||||| || || || | || |||||||| ||||| || ||||| Sbjct 5625 AGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACC 5684 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | |||| || || | ||| || || | ||||| || || || ||||| || Sbjct 5685 GGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAAT 5744 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCA-CCATACGTACTATTTTTACTCTCTA 13331 || || || |||||||| || || | | ||| | | || | || | || | | Sbjct 5745 ACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC-AGAGA 5803 Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391 |||| || |||||| | || || | || || || | |||| || || | Sbjct 5804 TCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGA 5863 Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 | | | ||| || | | | |||||||| || || || | |||||||| Sbjct 5864 ACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTT 5923 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | |||||||| |||||||| || || ||||| || || ||||| | || || | |||| Sbjct 5924 CGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCT 5983 Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 | ||||| | ||||| || | |||||||| || || || || ||| || |||| Sbjct 5984 GCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAA 6043 Query 13572 aaaaaGC 13578 | ||||| Sbjct 6044 AGAAAGC 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430663940235858