Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6222 152 1e-31 >seq6222 Length=12937 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||||||||| || ||||| || |||||||| || || | ||||||| Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || || ||||||| | |||||||||||||| || ||||||||||| Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || || || | || ||| |||||| || || | || || ||| Sbjct 4785 TGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTC 4844 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || ||||| Sbjct 4845 TTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | |||||||||||||| || || ||||| || | ||| | ||| ||| Sbjct 3981 AGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCT 4040 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| || || || |||||||| | | |||||||| ||||| || ||||| || || Sbjct 4041 TCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCT 4100 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || || || || | ||| || ||||| || || | || || ||| Sbjct 4101 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTC 4160 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||||||||| |||||||| Sbjct 4161 TTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 140 bits (154), Expect = 7e-28 Identities = 162/217 (75%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | || |||||||||||||| || || || || | || | ||| ||||| Sbjct 5123 TACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCTTC 5182 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||| || ||||| ||||||| | || || ||||| || || |||||||| || || Sbjct 5183 CAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCTTG 5242 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| || ||||| | |||||| ||| ||||| || || ||||||||||| Sbjct 5243 AATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTCTT 5302 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTT-TGTG 104565 || || || || || || || || ||||||| |||| Sbjct 5303 GCCCGTCAGGGTCTTCACGAAGATTTGCATTTCTGTG 5339 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||||||||| || | || | ||| ||||| | ||| || || Sbjct 3768 GTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGCTTACCG 3827 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 3828 GCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTG 3887 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| ||| ||||| || || | || || || || || || | ||| Sbjct 3888 ACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTT 3947 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 3948 TTCACGAAGATTTGCAT 3964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150503983288332