Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq44067 1712 0.0 seq4723 86.0 2e-12 >seq44067 Length=1252 Score = 1712 bits (1898), Expect = 0.0 Identities = 1129/1249 (90%), Gaps = 0/1249 (0%) Strand=Plus/Plus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCTGAT 60 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998 |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 61 TCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAACG 120 Query 32999 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 33058 || ||||||||||||||||||| || |||||||||||||||||||| ||| || | | Sbjct 121 ATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTACC 180 Query 33059 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 33118 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 181 CATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCCA 240 Query 33119 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTC 33178 ||||| |||||||||||| ||||| |||||||||||| ||||||||||||||||||||| Sbjct 241 CGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCCGGAACTGCCTGCTC 300 Query 33179 GTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTTCC 33238 |||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||| Sbjct 301 GTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTCC 360 Query 33239 CATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCAG 33298 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 361 CATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCAG 420 Query 33299 CCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCC 33358 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 CCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACCC 480 Query 33359 GTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGC 33418 |||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||| Sbjct 481 GTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTGC 540 Query 33419 CTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGTC 33478 | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 541 CGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGTT 600 Query 33479 GGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCC 33538 || ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| ||| Sbjct 601 GGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCCC 660 Query 33539 ATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGG 33598 ||||| | ||||||| | ||||||||||| |||||||| ||||||||||||||||||||| Sbjct 661 ATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTGG 720 Query 33599 CTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTTT 33658 |||||| || |||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 721 CTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTTT 780 Query 33659 TCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGT 33718 |||||||| |||||||||||| |||| || |||||||||||||||||||| |||||||| Sbjct 781 TCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAGA 840 Query 33719 GTGACCACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTG 33778 ||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 841 GTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCTG 900 Query 33779 ACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCT 33838 |||||||||||||||||||||||||||| || || || ||||||||||| ||||| |||| Sbjct 901 ACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGCT 960 Query 33839 TTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTT 33898 |||| || ||||| || ||||| ||||| |||||||| || || || | |||||| |||| Sbjct 961 TTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTTT 1020 Query 33899 TGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACAT 33958 ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 1021 TGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACAT 1080 Query 33959 CCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATT 34018 |||| || || || || | ||| || ||||| | ||||| |||||||| |||||||||| Sbjct 1081 CCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGATT 1140 Query 34019 CGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCTGAG 34078 ||||||| || || | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1141 CGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGAG 1200 Query 34079 GTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 34127 ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1201 ATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 1249 >seq4723 Length=43540 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 19583 TCAGCGATACGCTTCTCTGCGGCTTCCAGTTCATCAAGCAGCGCCAAGACGGTAGCCGGA 19642 || || || ||||||||||||||||||| ||||| |||||||||| ||||| || || Sbjct 35681 TCTGCTATGCGCTTCTCTGCGGCTTCCATCTCATCCAGCAGCGCCAGCACGGTGGCGGGG 35740 Query 19643 TTGGCTGCGGCGATGAATTCAGCAT 19667 || || ||||||||||| | ||||| Sbjct 35741 TTAGCCGCGGCGATGAAATTAGCAT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124726136302490