Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5375 84.2 1e-11 >seq5375 Length=21980 Score = 84.2 bits (92), Expect = 1e-11 Identities = 231/348 (66%), Gaps = 7/348 (2%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| |||||||| || || || | || |||||||| || || || Sbjct 1124 AGGCCAGTGACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGC 1183 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| || ||||| || | || | ||| || | || || || ||||| ||| | Sbjct 1184 ACCCCTAAGCCCATATCAGCT-GAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGC 1242 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGG 25670 ||| |||||||| | | || ||| |||||||| || || || ||| | ||| Sbjct 1243 CACATAAAACTGCGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGG 1302 Query 25671 GTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGG- 25729 ||||||||||| | | |||| | || ||||||||| |||| | | | | Sbjct 1303 GTTCCAGGCGCTTAAAACCATGCGGCGATCATCTGGGTTGGTTTTGAT--GGTGTGGAGA 1360 Query 25730 -TGTTTTGCAGCTGATCCAC-CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 25787 ||| || ||| |||||||| || | | | || ||||| ||||| | ||| || Sbjct 1361 ATGTGTTCCAGTTGATCCACACCTTGTTGGCTA-TAATCTGCATGCATGTTGGAGTATTC 1419 Query 25788 TGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCC 25835 || ||||||| | ||||||||| ||||| || || || | ||| || Sbjct 1420 GGCGCCGAAATGACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339886266906417