Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq4723 181 3e-41 >seq4723 Length=43540 Score = 181 bits (200), Expect = 3e-41 Identities = 160/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 12008 AGTGAGGAAGAGTTCTTTGCGGAGCTTCACCCGCAGGTGGTTGAGGTTCTCGGTACAGCG 12067 || || || || || || ||||||||||| ||||| | || ||| |||| || | ||| Sbjct 42078 AGCGAAGAGGAATTTTTCGCGGAGCTTCATCCGCAAATAGTAGAGATTCTTGGCATAGCT 42019 Query 12068 CTGATGCAGGTACTGGTAGAGCAGCGCGAACCTTCGCGTGAAGCTTTGATAGAAATGATT 12127 | |||||||| ||||| |||||||| || || || | | || ||||||| |||||| Sbjct 42018 GTTATGCAGGTGCTGGTTGAGCAGCGTGAGCCGTCAAGGAAGGCGCTGATAGAGATGATT 41959 Query 12128 CAGGTACTGTGGCAGGAAGAGGATGTGGACTTGGCTGTAGAACTGGCTATTGATGTTCTG 12187 ||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| Sbjct 41958 CAGGTTCTGTGGCAGGAAGATGATGTGGACTTGGCAGTAGAGCTGGCTATTGATGTGCTG 41899 Query 12188 ACGCTGCCGAAAGAGTAGGG 12207 || | ||||||||||||| Sbjct 41898 TCGTTATCGAAAGAGTAGGG 41879 Score = 143 bits (158), Expect = 7e-30 Identities = 227/321 (71%), Gaps = 22/321 (7%) Strand=Plus/Minus Query 20055 GCATGAATTTGGAAAACACTGTGAAATTCCACTCTCCGAAGTCTCCTCAACTATCA---- 20110 |||||||| | |||||||| |||||||||||| | ||||||| ||| || | Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTC-----AACGATGATTAG 34276 Query 20111 -GATTCACCGAGAGCAACGGCATCAGACTCACTGACTAATACCGATGTGATGGCAGCATT 20169 || || ||| | || ||||| |||||||| |||| || || | ||||| || | Sbjct 34275 CGACTCTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGAT 34216 Query 20170 TGGTATGGCGCAAAGTCGCGCTCCGCTCGGGTTCAGTGCTTTCAGCGGCAAGATGAACCT 20229 ||| ||| | |||| ||||| | |||||||| ||||||||| |||||||||| | | Sbjct 34215 TGGCATGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATAT 34156 Query 20230 GAGCGACAACGATAAGCGTAA---GGCAATTCAGTTACTGGTA---CAGCATGGGATGAA 20283 |||||| | || ||| | ||| || | | ||| || || |||| ||| | Sbjct 34155 CAGCGACTATGAC---CGTGACCGGGCGAT-CGG--ACTTTTAACTCAACATGCAATGGA 34102 Query 20284 GCATTGCGACAAGGTGGCTGCCTTACGCAAACTTGATACCAATGTTAAAGGGAAAGTAGT 20343 ||| ||||||||||| || ||||||||||| || || || || |||| ||||| | Sbjct 34101 GCAGTGCGACAAGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGAT 34042 Query 20344 GCAAACGCTCGCAACTTTCGC 20364 |||| ||||||||| ||||| Sbjct 34041 GCAAGTGCTCGCAACGTTCGC 34021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132234326740594