Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_005841.1
Length=41391
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 181 3e-41
>seq4723
Length=43540
Score = 181 bits (200), Expect = 3e-41
Identities = 160/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 12008 AGTGAGGAAGAGTTCTTTGCGGAGCTTCACCCGCAGGTGGTTGAGGTTCTCGGTACAGCG 12067
|| || || || || || ||||||||||| ||||| | || ||| |||| || | |||
Sbjct 42078 AGCGAAGAGGAATTTTTCGCGGAGCTTCATCCGCAAATAGTAGAGATTCTTGGCATAGCT 42019
Query 12068 CTGATGCAGGTACTGGTAGAGCAGCGCGAACCTTCGCGTGAAGCTTTGATAGAAATGATT 12127
| |||||||| ||||| |||||||| || || || | | || ||||||| ||||||
Sbjct 42018 GTTATGCAGGTGCTGGTTGAGCAGCGTGAGCCGTCAAGGAAGGCGCTGATAGAGATGATT 41959
Query 12128 CAGGTACTGTGGCAGGAAGAGGATGTGGACTTGGCTGTAGAACTGGCTATTGATGTTCTG 12187
||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||
Sbjct 41958 CAGGTTCTGTGGCAGGAAGATGATGTGGACTTGGCAGTAGAGCTGGCTATTGATGTGCTG 41899
Query 12188 ACGCTGCCGAAAGAGTAGGG 12207
|| | |||||||||||||
Sbjct 41898 TCGTTATCGAAAGAGTAGGG 41879
Score = 143 bits (158), Expect = 7e-30
Identities = 227/321 (71%), Gaps = 22/321 (7%)
Strand=Plus/Minus
Query 20055 GCATGAATTTGGAAAACACTGTGAAATTCCACTCTCCGAAGTCTCCTCAACTATCA---- 20110
|||||||| | |||||||| |||||||||||| | ||||||| ||| || |
Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTC-----AACGATGATTAG 34276
Query 20111 -GATTCACCGAGAGCAACGGCATCAGACTCACTGACTAATACCGATGTGATGGCAGCATT 20169
|| || ||| | || ||||| |||||||| |||| || || | ||||| || |
Sbjct 34275 CGACTCTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGAT 34216
Query 20170 TGGTATGGCGCAAAGTCGCGCTCCGCTCGGGTTCAGTGCTTTCAGCGGCAAGATGAACCT 20229
||| ||| | |||| ||||| | |||||||| ||||||||| |||||||||| | |
Sbjct 34215 TGGCATGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATAT 34156
Query 20230 GAGCGACAACGATAAGCGTAA---GGCAATTCAGTTACTGGTA---CAGCATGGGATGAA 20283
|||||| | || ||| | ||| || | | ||| || || |||| ||| |
Sbjct 34155 CAGCGACTATGAC---CGTGACCGGGCGAT-CGG--ACTTTTAACTCAACATGCAATGGA 34102
Query 20284 GCATTGCGACAAGGTGGCTGCCTTACGCAAACTTGATACCAATGTTAAAGGGAAAGTAGT 20343
||| ||||||||||| || ||||||||||| || || || || |||| ||||| |
Sbjct 34101 GCAGTGCGACAAGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGAT 34042
Query 20344 GCAAACGCTCGCAACTTTCGC 20364
|||| ||||||||| |||||
Sbjct 34041 GCAAGTGCTCGCAACGTTCGC 34021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132234326740594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |