Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq9686 351 6e-92 >seq9686 Length=37809 Score = 351 bits (388), Expect = 6e-92 Identities = 403/542 (74%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 31660 ATGCTAATAGGCTATGTACGCGTATCAACAAATGAACAAAACACTGCTTTACAACGAAAC 31719 ||||| || |||||||| ||||||||||||||||| || ||||| || |||||||| || Sbjct 27159 ATGCTGATTGGCTATGTTCGCGTATCAACAAATGACCAGAACACCGCATTACAACGGAAT 27218 Query 31720 GCTCTTGAAAGCGCAGGATGTGAGCTAATTTTTGAGGACAAGGCGAGCGGCAAAAAGGCT 31779 || || || |||||||| ||||||||||||||||| || ||| || ||||||| | || Sbjct 27219 GCGCTGGAGAGCGCAGGTTGTGAGCTAATTTTTGAAGATAAGATCAGTGGCAAAACGTCT 27278 Query 31780 GAGCGCCCTGGGTTAAAAAAGGTACTCCGTATGCTTTCCAGAGGTGATACCCTGGTCGTA 31839 || ||||| ||| | || || ||| | | ||| ||| ||||| ||||| || Sbjct 27279 GACCGCCCAGGGCTTAAGCGTGTGCTCAGAACGCTAGGGGAAGGAGATACGCTGGTGGTT 27338 Query 31840 TGGAAGTTAGACCGTCTTGGGCGCAGCATGCGTCACTTAGTTGTGCTGGTGGAAGAGCTG 31899 |||||||| ||||| || || ||||||||||| || | || ||||| |||||||| ||| Sbjct 27339 TGGAAGTTGGACCGGCTGGGACGCAGCATGCGACATCTTGTCGTGCTCGTGGAAGAACTG 27398 Query 31900 CGTGACAGAGGCATTAACTTCCGGAGTCTCACTGACTCCATCGACACCAGTACACCAATG 31959 ||||| ||||| |||||||| ||||| || || ||| ||| || |||||||| || ||| Sbjct 27399 CGTGATAGAGGGATTAACTTTCGGAGCCTGACAGACAGCATTGATACCAGTACGCCGATG 27458 Query 31960 GGGCGCTTTTTCTTTCACGTAATGGGGGCGCTGGCAGAAATGGAACGTGAGCTTATCGTT 32019 ||||| || || || || |||||||| || ||||| || ||||| || ||||| || || Sbjct 27459 GGGCGGTTCTTTTTCCATGTAATGGGCGCACTGGCCGAGATGGAGCGAGAGCTGATAGTC 27518 Query 32020 GAACGTACACGCGCTGGACTTGATGCAGCTCGCGCAGAAGGTCGTATAGGTGGGCGTCGG 32079 ||||| || |||||||| | | || || |||||||| ||| | || || || | || Sbjct 27519 GAACGAACCCGCGCTGGTTTAGCAGCTGCACGCGCAGAGGGTAGGATTGGAGGCAGACGC 27578 Query 32080 CCTAAATACCAAGAAGAAACATGGCAGCAAATGCGGCGATTGCTGGAGAAGGGCATCCCC 32139 || ||||| |||| ||| || ||| | | ||| | || ||| || Sbjct 27579 CCAAAATATAGCGAAGCTGAGTGGGCTCAGATGGGAAGGTTGATAGAAGGGGGAATGGAT 27638 Query 32140 CGTAAGCAGGTTGCAATCATCTATGATGTGGCTGTTTCCACGCTTTATAAGAAGTTTCCG 32199 | |||||||| ||||||||||||||||| | || || || || || ||||| ||||| Sbjct 27639 AGAAAGCAGGTGGCAATCATCTATGATGTCGGGGTATCTACTCTGTACAAGAAATTTCCC 27698 Query 32200 GC 32201 || Sbjct 27699 GC 27700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303011134677909