Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005886.2 Length=47399 Score E Sequences producing significant alignments: (Bits) Value seq9686 80.6 8e-11 >seq9686 Length=37809 Score = 80.6 bits (88), Expect = 8e-11 Identities = 165/245 (67%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 23818 AACGCGTTCATATCCTTGCCTTCGTCGGCAACGTCAAGCGATGAGAACCGCTGCCCCGTG 23877 || |||||| | ||| ||| |||||||| ||||| | || | |||| || || Sbjct 7302 AAGGCGTTCTTGTCCCGGCCCTCGTCGGCGACGTCCATCGCGCCCAGTCGCTTGCCGGTT 7243 Query 23878 ACAGTAAGCCCAAGTTTCACATCCGCATCGATCGCGGCATCGATCCATTCGAGCGGGATA 23937 ||| || || || | || ||||||| || || | | ||| ||| ||||| Sbjct 7242 GGTTTAATGCCCAGCTTGATATGAGCATCGACGGCAGCCTGCACCCAATCGGATGGGATC 7183 Query 23938 AGCACACCCTCAGCGGATGCGCTGTAGTCGATGTCGATTTCCTGTGCGACGACGAGCGCA 23997 || ||||| || || ||||||||||||| | ||| | |||||| || || || | || Sbjct 7182 AGGACACCTTCCGCTGATGCGCTGTAGTTCAGGTCAAGTTCCTGCGCCACCACCACCGGG 7123 Query 23998 TT---GAATTTCTGTTTCTGCTTCTTATACCACTCGTCATCTTTGCGCGGATCGTCGCGC 24054 || || ||| | || ||| ||||||||| ||||| |||||||| || | ||| Sbjct 7122 TTGTCGATTTTTTCGCACTCCTTGCGATACCACTCCTCATCCTTGCGCGGGTCATTTCGC 7063 Query 24055 CAATG 24059 || || Sbjct 7062 CAGTG 7058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151446084897378