Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3953 91.5 2e-13 >seq3953 Length=20395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 164501 TAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACAT 164560 |||||||||||||| | ||||| || || || | || || |||||| || ||||| | Sbjct 5654 TAGGCTGTAAACATGTCAAAGGCATCTTGTTGTACGGGCCGCCTGGTACGGGCAAAACTT 5595 Query 164561 TAATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATG 164617 ||||||| | |||| |||| | | || |||||| || ||| ||||| |||| Sbjct 5594 TAATGGCCAGGCAGATTG-GCAAGATGCTCAATGCTCGCGAACC--TAAGATTGTGAATG 5538 Query 164618 GTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTC 164677 ||||| || | ||| | ||||| || || ||||| ||||| || || | ||||| Sbjct 5537 GTCCTCAAATCTTGGATAAATACGTGGGCGAGTCTGAAGCCAACATTCGTCGCTTGTTCG 5478 Query 164678 AGGAGGCTGAAGAAGAACAAAA 164699 || || ||||||||| |||| Sbjct 5477 CCGAAGCGGAAGAAGAAGAAAA 5456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595420410956400