Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4890 104 1e-17 seq1247 102 4e-17 seq978 102 4e-17 seq7580 100 1e-16 seq13041 98.7 5e-16 seq48 98.7 5e-16 seq529 82.4 4e-11 >seq4890 Length=10068 Score = 104 bits (114), Expect = 1e-17 Identities = 71/80 (89%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||| | ||| |||||||||| ||||||||||||||||||||||||| Sbjct 750 AAAAAA--AATTTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGAC 693 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||||||||||||| Sbjct 692 GCTCTAACCAACTGAGCTAA 673 Score = 102 bits (112), Expect = 4e-17 Identities = 70/79 (89%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||| | ||| |||||||||| |||||||||||||||||||||||||| Sbjct 1662 AAAAA--AATTTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACG 1605 Query 11505 CTCTRACCAACTGAGCTAA 11523 |||| |||||||||||||| Sbjct 1604 CTCTAACCAACTGAGCTAA 1586 Score = 98.7 bits (108), Expect = 5e-16 Identities = 70/80 (88%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||| | ||| |||||||||| ||||||||||||||||||||||||| Sbjct 78 AAAAAAT--ACGTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGAC 21 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||||||||||||| Sbjct 20 GCTCTAACCAACTGAGCTAA 1 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| Sbjct 265 TTGGCCCGTGAGGGGATCGAACCCACGGCCTTCGCGTTATTAGCACGACGCTCTAACCAG 206 Query 11515 CTGAGCTAATGGGCCGTCG 11533 ||||||||| |||| ||| Sbjct 205 CTGAGCTAACAGGCCTTCG 187 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 937 TGGCCCGTGAGGGGATCGAACCCACGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 878 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 877 TGAGCTAACAGGCC 864 >seq1247 Length=17537 Score = 102 bits (112), Expect = 4e-17 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | ||| |||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 17234 ATTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 17293 Query 11514 ACTGAGCTAA 11523 |||||||||| Sbjct 17294 ACTGAGCTAA 17303 >seq978 Length=7401 Score = 102 bits (112), Expect = 4e-17 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||| ||| |||||||||| || ||||||||||||||||||||| Sbjct 327 AAAAAAT---ATTGGCCCGTGAGGGGATCGAACCCACGGCCTTCGCGTTATTAGCACGAC 383 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 384 GCTCTAACCAACTGAGCTAACAGGCC 409 Score = 95.1 bits (104), Expect = 6e-15 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 5 GGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 60 >seq7580 Length=9045 Score = 100 bits (110), Expect = 1e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||| | ||| |||||||||| |||||||||||||||||||||||||||||| || Sbjct 4688 AAACTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4747 Query 11512 CAACTGAGCTAA 11523 |||||||||||| Sbjct 4748 CAACTGAGCTAA 4759 >seq13041 Length=283 Score = 98.7 bits (108), Expect = 5e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | ||| |||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 216 TGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 275 Query 11516 TGAGCTAA 11523 |||||||| Sbjct 276 TGAGCTAA 283 Score = 95.1 bits (104), Expect = 6e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 7 GGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACAAG 66 Query 11528 CCGT 11531 |||| Sbjct 67 CCGT 70 >seq48 Length=34037 Score = 98.7 bits (108), Expect = 5e-16 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || ||| || || | |||| | ||| |||||||||| ||||||||||||||| Sbjct 7912 AGAAT-AAGAAAGAAAAAATTCTGGCTCGTGAGGGGATCGAACCCTCGACCTTCGCGTTA 7970 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAA 11523 ||||||||||||||| |||||||||||||| Sbjct 7971 TTAGCACGACGCTCTAACCAACTGAGCTAA 8000 >seq529 Length=26975 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| ||||||||| |||||| ||||||||||||| ||||||| |||||| Sbjct 23911 TGGCCCGTGAGGGGATCGAACAAGAGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 23852 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 23851 TGAGCTAACAGGCC 23838 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261297979984804