Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6222 138 1e-27 seq3468 93.3 4e-14 >seq6222 Length=12937 Score = 138 bits (152), Expect = 1e-27 Identities = 183/251 (73%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| | | || || |||| ||| || | |||||||| | || ||||| Sbjct 4172 GGTTTTTACAAAAATCTGCATACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTC 4231 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| | || ||||| ||| || || || |||| |||||| || | ||| Sbjct 4232 TTTTTGGATATTGTAATCAG--ATAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAG 4289 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 ||||||| ||| ||||| || ||||| ||||||||||| | ||||| || |||||| Sbjct 4290 ATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 4349 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | ||||||| | | ||||| || | ||||||||||| || |||||||| ||||| Sbjct 4350 TCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACG 4409 Query 94997 AAGATCTGCAT 95007 || |||||||| Sbjct 4410 AAAATCTGCAT 4420 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| || | ||| |||||||| || | ||||| ||| || || || || Sbjct 3750 CGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACA-AG-GTACGAC 3807 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || || ||| | ||||| || | ||||||||| |||||||||||||| | Sbjct 3808 CATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCT 3867 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| || |||||| | | ||||| | | || || || | |||| Sbjct 3868 TGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || || | |||||||| ||||| ||||| Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | |||||||||||||| | ||| || | | | || || || || | Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGT--CAGACAGGGTACGACCGTCTT 4725 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| ||| | || ||||| | ||| ||||| |||||||| |||||||| || | Sbjct 4726 CCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTT 4785 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || |||||| | | |||||| | | ||||| || | ||||| || | Sbjct 4786 GAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCT 4845 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||| || || || ||||| Sbjct 4846 TTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| |||| |||||||| | || ||||| ||||| | || ||||| | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || || ||||| || || ||| | ||||| | | ||| || || || | Sbjct 4482 A-AG-GTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGG 4539 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||||||||| | || || || |||||| | | ||||||| | || | Sbjct 4540 GAATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAA 4599 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||||| || || | ||| ||||| ||||| ||||| Sbjct 4600 CTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| ||| || | |||||||| | || ||||| ||||| | | Sbjct 4866 AAAATTTGCATACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATG 4925 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || |||| ||||| || | || || || | ||| Sbjct 4926 TTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGT 4985 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| |||||||| ||||||||||| | ||||| ||||||||| | | ||||| Sbjct 4986 TGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCG 5045 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | || ||||| || ||||| | ||||| || || || |||||| Sbjct 5046 GACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Query 95009 C 95009 | Sbjct 5106 C 5106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| |||| || ||||| || || | ||| ||||| | | | || || Sbjct 5118 CGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATC--TGACAACGTACGAC 5175 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || || || | || ||||| | |||||| || || || |||||||||| Sbjct 5176 CATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTT 5235 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| || |||||| | | || || | | || || || | || | Sbjct 5236 TGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||| ||||| ||||| Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 >seq3468 Length=50068 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| | ||||| || | ||| ||||| || || || ||||| ||| Sbjct 38432 TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTG 38373 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || ||| |||||| | | ||||| |||| |||||| Sbjct 38372 TCTTGGATTTTGGCCTTAACATTTTCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATG 38313 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || | ||| || || |||||||||||| Sbjct 38312 GTCTTACCCGTCAAAGTCTTGACGAAGATCTGCATG 38277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447951456910440