Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 138 1e-27
seq3468 93.3 4e-14
>seq6222
Length=12937
Score = 138 bits (152), Expect = 1e-27
Identities = 183/251 (73%), Gaps = 5/251 (2%)
Strand=Plus/Plus
Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818
||||||| |||| | | || || |||| ||| || | |||||||| | || |||||
Sbjct 4172 GGTTTTTACAAAAATCTGCATACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTC 4231
Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAG 94876
||||| | || ||||| ||| || || || |||| |||||| || | |||
Sbjct 4232 TTTTTGGATATTGTAATCAG--ATAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAG 4289
Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936
||||||| ||| ||||| || ||||| ||||||||||| | ||||| || ||||||
Sbjct 4290 ATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 4349
Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996
| | ||||||| | | ||||| || | ||||||||||| || |||||||| |||||
Sbjct 4350 TCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACG 4409
Query 94997 AAGATCTGCAT 95007
|| ||||||||
Sbjct 4410 AAAATCTGCAT 4420
Score = 120 bits (132), Expect = 3e-22
Identities = 159/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
||||| ||||| || | ||| |||||||| || | ||||| ||| || || || ||
Sbjct 3750 CGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACA-AG-GTACGAC 3807
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| || || ||| | ||||| || | ||||||||| |||||||||||||| |
Sbjct 3808 CATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCT 3867
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | |||||| || |||||| | | ||||| | | || || || | ||||
Sbjct 3868 TGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| || || | |||||||| ||||| |||||
Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 109 bits (120), Expect = 5e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
||||| || | |||||||||||||| | ||| || | | | || || || || |
Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGT--CAGACAGGGTACGACCGTCTT 4725
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||| ||||| ||| | || ||||| | ||| ||||| |||||||| |||||||| || |
Sbjct 4726 CCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTT 4785
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|||||| || |||||| | | |||||| | | ||||| || | ||||| || |
Sbjct 4786 GAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCT 4845
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || |||||||| || || || |||||
Sbjct 4846 TTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| ||| |||| |||||||| | || ||||| ||||| | || ||||| |
Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481
Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || || || || ||||| || || ||| | ||||| | | ||| || || || |
Sbjct 4482 A-AG-GTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGG 4539
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||||||||| | || || || |||||| | | ||||||| | || |
Sbjct 4540 GAATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAA 4599
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||||||||| || || | ||| ||||| ||||| |||||
Sbjct 4600 CTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 96.9 bits (106), Expect = 3e-15
Identities = 166/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||| ||| || | |||||||| | || ||||| ||||| | |
Sbjct 4866 AAAATTTGCATACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATG 4925
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || || || || | || |||| ||||| || | || || || | |||
Sbjct 4926 TTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGT 4985
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||| |||||||| ||||||||||| | ||||| ||||||||| | | |||||
Sbjct 4986 TGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCG 5045
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | || || || | || ||||| || ||||| | ||||| || || || ||||||
Sbjct 5046 GACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105
Query 95009 C 95009
|
Sbjct 5106 C 5106
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
||||| ||||| |||| || ||||| || || | ||| ||||| | | | || ||
Sbjct 5118 CGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATC--TGACAACGTACGAC 5175
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| || || || | || ||||| | |||||| || || || ||||||||||
Sbjct 5176 CATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTT 5235
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | |||||| || |||||| | | || || | | || || || | || |
Sbjct 5236 TGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || || || || ||||| ||||| |||||
Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
>seq3468
Length=50068
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| ||||| ||| | ||||| || | ||| ||||| || || || ||||| |||
Sbjct 38432 TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTG 38373
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| ||||| || ||| |||||| | | ||||| |||| ||||||
Sbjct 38372 TCTTGGATTTTGGCCTTAACATTTTCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATG 38313
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || | ||| || || ||||||||||||
Sbjct 38312 GTCTTACCCGTCAAAGTCTTGACGAAGATCTGCATG 38277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447951456910440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |