Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33891 192 9e-45 seq17029 172 9e-39 seq7268 152 8e-33 seq31141 134 2e-27 >seq33891 Length=384 Score = 192 bits (212), Expect = 9e-45 Identities = 205/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||||| | |||| || |||||||||||||| ||||||||||| ||||| Sbjct 37 GCTAAGCGCCATCGCAAAG-TCTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCTAT 95 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || ||||||||| |||||||| | |||| ||||||| Sbjct 96 CCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGACTCATCTACGAAGAGAC 155 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| | | ||| || | || || || ||| ||||| Sbjct 156 GCGTGGTGTGCTCAAGGTGTTCCTTGAAAACGTCATTCGCGACGCCGTCACCTACACCGA 215 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || || || ||||| | ||||| |||| || || |||||||| || || Sbjct 216 ACACGCAAAGCGGAAAACCGTCACGGCTATGGACGTCGTGTACGCTTTGAAACGCCAGGG 275 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || |||||||| ||||| Sbjct 276 CCGGACTTTGTACGGTTTTGGTGGTTAA 303 >seq17029 Length=1671 Score = 172 bits (190), Expect = 9e-39 Identities = 182/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| | | || |||||||||||||| |||||||| || || || Sbjct 240 CGCTAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAAGGTATCACCAAACCTGCCAT 181 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || ||||||||| |||||||| | | || ||||| | Sbjct 180 CCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGACTCATTTACGAAGAAAC 121 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| || | ||||| || ||| ||||| Sbjct 120 CCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATTCGCGATGCCGTCACCTACACCGA 61 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||| || || | ||||| |||| || || |||||||| || || Sbjct 60 ACACGCTAAGCGGAAGACCGTAACGGCTATGGACGTCGTTTACGCTTTGAAACGCCAGGG 1 >seq7268 Length=13466 Score = 152 bits (168), Expect = 8e-33 Identities = 194/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | ||| | || || || || ||||| || |||||||||||||| Sbjct 12675 GCGAAGCGTCATCGCAAAGTCT-TGCGTGACAATATTCAAGGGATTACCAAGCCAGCTAT 12733 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||||||||||| || ||| ||||||| | | || ||||| | Sbjct 12734 ACGCCGGTTGGCTCGTCGTGGTGGAGTAAAACGTATCTCTGGCCTCATTTACGAAGAAAC 12793 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 |||| ||| |||| | || || | | |||||||| || | | || || || || | Sbjct 12794 CCGTGGTGTGCTGAAAGTGTTTCTAGAAAACGTTATCCGGGACGCCGTTACA-TACACTG 12852 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| || ||| | ||||| | || || || ||||||||||| | Sbjct 12853 AACACGCCAAACGCAAGACCGTTACCGCTATGGACGTAGTTTACGCCTTGAAACGTCAGG 12912 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | |||| | || || ||||| Sbjct 12913 GACGTACTTTGTACGGCTTTGG 12934 >seq31141 Length=1030 Score = 134 bits (148), Expect = 2e-27 Identities = 181/256 (71%), Gaps = 16/256 (6%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| | | || |||||||||||| | |||||||| || ||||| Sbjct 775 CGCTAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAACGTATCACCAAACCTGCTAT 834 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA----------------T 16535 ||| ||| ||||||||||||| || ||||||||| |||||||| | Sbjct 835 CCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGACTCTGGCTCTGGACTCT 894 Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 | | || ||||| | |||| ||| | ||| | ||||| | | ||| || | |||| Sbjct 895 GGATTTACGAAGAAACCCGTGGTGTGCTCAAGGTGTTCCTTGAAAACGTCATTCGCGATG 954 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||| |||||||| || ||||| || || | ||||| |||| || | Sbjct 955 CCGTCACTTACACCGAACACGCTAAGCGGAAGACCGTAACGGCTATGGACGTCGTTTACG 1014 Query 16656 CATTGAAACGTCAAGG 16671 | |||||||| || || Sbjct 1015 CTTTGAAACGCCAGGG 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79019766480897