Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq4723 632 6e-177 >seq4723 Length=43540 Score = 632 bits (700), Expect = 6e-177 Identities = 654/850 (77%), Gaps = 5/850 (1%) Strand=Plus/Minus Query 43156 GCATGAATCTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGACA 43215 |||||||||| ||||| | |||| || ||||| || || || || ||| | |||| Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACT 34271 Query 43216 TCCCTCGCGCAACAGCTTCAGAAACGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 43275 || ||||| || || ||||| | || || || ||||| | ||||| || || || | Sbjct 34270 CTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCA 34211 Query 43276 TGACTCAAAGTCGCGCCTCGTTGGGTTACAGCTCGTTTCTTGGGAAGATGGAAATCAGCA 43335 |||| |||| |||||| | | || | || | || || || |||||||| |||||| Sbjct 34210 TGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCG 34151 Query 43336 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACTGCCTATGCTCTTAAGCACTGCGATA 43395 | |||||||||| || || | ||| | ||| |||| | |||| ||||| | Sbjct 34150 ACTATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACA 34091 Query 43396 AGGTTACTGCCTTACGTAAGCTCGAAAATGATATTAAGCCAAAGGTAATGCAAGTTCTCG 43455 ||||| | |||||||| |||||||| | |||||||||| || || |||||||| |||| Sbjct 34090 AGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCG 34031 Query 43456 CAACATTCGCATTTGCTGACTATTCACGAAGCGCTGCCAGTACCAGAACCTGTGATTGCT 43515 |||| ||||||||||||||||| |||| ||||| ||||| ||||||| || || |||| Sbjct 34030 CAACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGCACCAGAATGTGCGACTGCT 33971 Query 43516 GCGGCGGGAAGAAGTTTATCGATGCCGAGGTAATGACGATGAAAAGCATCGGGCAGCCGT 43575 || || || || || |||| || |||| ||||||||||| ||||| ||| | | Sbjct 33970 GCCAGGGAAATAAATTCGTCGAAGCGAAGGTGATGACGATGAAGCATATCGG-CAGACCT 33912 Query 43576 A-CCTCTCAGAGCGCAAGGAGACGGTGAAAGTTTTGTGCAATAAGTGCAAAGGGAAGGGG 43634 | ||| || | ||| ||||| || || | ||| | || || |||||||||||| Sbjct 33911 AACCTGGAGGAAAGGCGGGAAACGGTTAAGGTGCTTTGCCACAAATGTAAAGGGAAGGGG 33852 Query 43635 GTTCTGACCAACGCATGCCAGTGCAATGGCAAAGGTGTTGTTATCGATAAAGAGAAAACT 43694 || |||||||| || || ||||||||||| || || || || | || |||||||||||| Sbjct 33851 GTGCTGACCAATGCCTGTCAGTGCAATGGGAAGGGCGTGGTGCTGGACAAAGAGAAAACT 33792 Query 43695 ATTCTACAAGGAGGCGTCCCTGCATACAAAACATGCAGACGTTGTAATGGGCGAGGATAT 43754 ||||||||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||| Sbjct 33791 ATTCTACAAGGCGGCGTGCCAGCATATAAAACGTGCAGCCGGTGCAATGGGCGTGGATAT 33732 Query 43755 GCTCGGTTACTGCCTGATAGCGTTCGAAAGTACATCTGCGCAACATTGATTGATATTCCT 43814 || | || || || |||||||| || || || |||||||| || |||| ||||||||| Sbjct 33731 GCCAGATTGCTACCGGATAGCGTCCGTAAATATATCTGCGCGACGGTGATGGATATTCCT 33672 Query 43815 GAAACCACATGGCGCAGGTCATATAAGGATTTCTTCGAAAGTCTGGTAGGTGAGTGTATT 43874 |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 33671 GAAACCACGTGGCGCAGGTCTTACAAGGATTTCTTCGAAAGCCTGGTAGGTGAGTGCATT 33612 Query 43875 AAGCAGGAGGAATATGCAAATCAGATGTTGAGCAAAGTCACGCAGTGATAAATATTTTCT 43934 || ||||||||||| ||||| | |||||||| ||||||||| |||| ||| |||||||| Sbjct 33611 AAACAGGAGGAATACGCAAACCGGATGTTGAACAAAGTCACACAGTAGTAAGTATTTTCT 33552 Query 43935 ACTGAAA-AGGAGTTCTGTAGAAAA-TGCTCTTTACAAAGTGGCGATTTTTGTTTAATAT 43992 | ||||| |||| || | ||||||| | | |||||||||||||||||||||||||||| | Sbjct 33551 A-TGAAATAGGATTTATCTAGAAAATTACACTTTACAAAGTGGCGATTTTTGTTTAATCT 33493 Query 43993 CGTTTCTAAC 44002 || |||||| Sbjct 33492 CGACTCTAAC 33483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149850434544476