Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 632 6e-177
>seq4723
Length=43540
Score = 632 bits (700), Expect = 6e-177
Identities = 654/850 (77%), Gaps = 5/850 (1%)
Strand=Plus/Minus
Query 43156 GCATGAATCTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGACA 43215
|||||||||| ||||| | |||| || ||||| || || || || ||| | ||||
Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACT 34271
Query 43216 TCCCTCGCGCAACAGCTTCAGAAACGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 43275
|| ||||| || || ||||| | || || || ||||| | ||||| || || || |
Sbjct 34270 CTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCA 34211
Query 43276 TGACTCAAAGTCGCGCCTCGTTGGGTTACAGCTCGTTTCTTGGGAAGATGGAAATCAGCA 43335
|||| |||| |||||| | | || | || | || || || |||||||| ||||||
Sbjct 34210 TGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCG 34151
Query 43336 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACTGCCTATGCTCTTAAGCACTGCGATA 43395
| |||||||||| || || | ||| | ||| |||| | |||| ||||| |
Sbjct 34150 ACTATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACA 34091
Query 43396 AGGTTACTGCCTTACGTAAGCTCGAAAATGATATTAAGCCAAAGGTAATGCAAGTTCTCG 43455
||||| | |||||||| |||||||| | |||||||||| || || |||||||| ||||
Sbjct 34090 AGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCG 34031
Query 43456 CAACATTCGCATTTGCTGACTATTCACGAAGCGCTGCCAGTACCAGAACCTGTGATTGCT 43515
|||| ||||||||||||||||| |||| ||||| ||||| ||||||| || || ||||
Sbjct 34030 CAACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGCACCAGAATGTGCGACTGCT 33971
Query 43516 GCGGCGGGAAGAAGTTTATCGATGCCGAGGTAATGACGATGAAAAGCATCGGGCAGCCGT 43575
|| || || || || |||| || |||| ||||||||||| ||||| ||| | |
Sbjct 33970 GCCAGGGAAATAAATTCGTCGAAGCGAAGGTGATGACGATGAAGCATATCGG-CAGACCT 33912
Query 43576 A-CCTCTCAGAGCGCAAGGAGACGGTGAAAGTTTTGTGCAATAAGTGCAAAGGGAAGGGG 43634
| ||| || | ||| ||||| || || | ||| | || || ||||||||||||
Sbjct 33911 AACCTGGAGGAAAGGCGGGAAACGGTTAAGGTGCTTTGCCACAAATGTAAAGGGAAGGGG 33852
Query 43635 GTTCTGACCAACGCATGCCAGTGCAATGGCAAAGGTGTTGTTATCGATAAAGAGAAAACT 43694
|| |||||||| || || ||||||||||| || || || || | || ||||||||||||
Sbjct 33851 GTGCTGACCAATGCCTGTCAGTGCAATGGGAAGGGCGTGGTGCTGGACAAAGAGAAAACT 33792
Query 43695 ATTCTACAAGGAGGCGTCCCTGCATACAAAACATGCAGACGTTGTAATGGGCGAGGATAT 43754
||||||||||| ||||| || ||||| ||||| ||||| || || |||||||| ||||||
Sbjct 33791 ATTCTACAAGGCGGCGTGCCAGCATATAAAACGTGCAGCCGGTGCAATGGGCGTGGATAT 33732
Query 43755 GCTCGGTTACTGCCTGATAGCGTTCGAAAGTACATCTGCGCAACATTGATTGATATTCCT 43814
|| | || || || |||||||| || || || |||||||| || |||| |||||||||
Sbjct 33731 GCCAGATTGCTACCGGATAGCGTCCGTAAATATATCTGCGCGACGGTGATGGATATTCCT 33672
Query 43815 GAAACCACATGGCGCAGGTCATATAAGGATTTCTTCGAAAGTCTGGTAGGTGAGTGTATT 43874
|||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 33671 GAAACCACGTGGCGCAGGTCTTACAAGGATTTCTTCGAAAGCCTGGTAGGTGAGTGCATT 33612
Query 43875 AAGCAGGAGGAATATGCAAATCAGATGTTGAGCAAAGTCACGCAGTGATAAATATTTTCT 43934
|| ||||||||||| ||||| | |||||||| ||||||||| |||| ||| ||||||||
Sbjct 33611 AAACAGGAGGAATACGCAAACCGGATGTTGAACAAAGTCACACAGTAGTAAGTATTTTCT 33552
Query 43935 ACTGAAA-AGGAGTTCTGTAGAAAA-TGCTCTTTACAAAGTGGCGATTTTTGTTTAATAT 43992
| ||||| |||| || | ||||||| | | |||||||||||||||||||||||||||| |
Sbjct 33551 A-TGAAATAGGATTTATCTAGAAAATTACACTTTACAAAGTGGCGATTTTTGTTTAATCT 33493
Query 43993 CGTTTCTAAC 44002
|| ||||||
Sbjct 33492 CGACTCTAAC 33483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149850434544476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |