Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5580 143 3e-29 >seq5580 Length=7482 Score = 143 bits (158), Expect = 3e-29 Identities = 466/725 (64%), Gaps = 6/725 (1%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| || || | ||| | || || || ||||| ||||| ||||| || || || | Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||| || || || ||||| || || | || || ||| ||||| || Sbjct 5392 TCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAAG 5451 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | | ||||| || || || || || || ||| || ||||| ||||| || | || Sbjct 5452 AGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATG 5511 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 ||| || | ||| | ||||| || || |||||| || || || || || Sbjct 5512 GCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATT 5571 Query 21425 TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 | | | | || | || | | || ||||| |||| | || |||||| Sbjct 5572 TGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAA 5631 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 || ||||||||||| || || | || | || || ||||| || | ||||||||| Sbjct 5632 TCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATC 5691 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 || |||||||| || | ||| || || || ||||| | || || || ||||| ||||| Sbjct 5692 AAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCG 5751 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664 ||||| ||||| || | | ||| ||| | | | | || || | |||||||| Sbjct 5752 ACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCATTTA 5811 Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | ||||| |||||| | |||| || || || |||||| || || Sbjct 5812 AAGGCCCAATCGGCCTTCTTCTTT-ACACAAGGAAGGGTTTCGATAGCTCGGAACAGCAT 5870 Query 21724 AtttttttCATC--TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | ||| ||||| | ||||| ||| | ||||||||| ||| Sbjct 5871 CTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA--ATACATTTCGGAA 5928 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 || || ||||| || || ||||| || ||||| ||||| | || || | | || || Sbjct 5929 TGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACT 5988 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || |||||| | ||||||||||||| || || |||||| ||||||||| || Sbjct 5989 TCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAA 6048 Query 21902 GCCAA 21906 ||||| Sbjct 6049 GCCAA 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531497692329960