Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 143 3e-29
>seq5580
Length=7482
Score = 143 bits (158), Expect = 3e-29
Identities = 466/725 (64%), Gaps = 6/725 (1%)
Strand=Plus/Plus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
||||| || || | ||| | || || || ||||| ||||| ||||| || || || |
Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
|||||||| || || || ||||| || || | || || ||| ||||| ||
Sbjct 5392 TCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAAG 5451
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
| | ||||| || || || || || || ||| || ||||| ||||| || | ||
Sbjct 5452 AGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATG 5511
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424
||| || | ||| | ||||| || || |||||| || || || || ||
Sbjct 5512 GCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATT 5571
Query 21425 TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484
| | | | || | || | | || ||||| |||| | || ||||||
Sbjct 5572 TGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAA 5631
Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544
|| ||||||||||| || || | || | || || ||||| || | |||||||||
Sbjct 5632 TCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATC 5691
Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604
|| |||||||| || | ||| || || || ||||| | || || || ||||| |||||
Sbjct 5692 AAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCG 5751
Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664
||||| ||||| || | | ||| ||| | | | | || || | ||||||||
Sbjct 5752 ACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCATTTA 5811
Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723
||||| | ||||| |||||| | |||| || || || |||||| || ||
Sbjct 5812 AAGGCCCAATCGGCCTTCTTCTTT-ACACAAGGAAGGGTTTCGATAGCTCGGAACAGCAT 5870
Query 21724 AtttttttCATC--TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781
| ||| ||||| | ||||| ||| | ||||||||| |||
Sbjct 5871 CTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA--ATACATTTCGGAA 5928
Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841
|| || ||||| || || ||||| || ||||| ||||| | || || | | || ||
Sbjct 5929 TGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACT 5988
Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901
|| |||||| | ||||||||||||| || || |||||| ||||||||| ||
Sbjct 5989 TCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAA 6048
Query 21902 GCCAA 21906
|||||
Sbjct 6049 GCCAA 6053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531497692329960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |