Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6222 125 7e-24 seq5580 98.7 9e-16 >seq6222 Length=12937 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| ||||||| | ||| | ||| | | Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | |||||| || ||| || |||||||| || ||||| |||||| Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || |||||||||| | ||||| | | | | | | ||||| ||| Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| |||||||| ||||| ||||||| Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGTCCT 4665 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || ||||||| | ||| | ||| || Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||| ||||| || |||||||||||| Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||| || | ||||||| | | | | |||||| ||| Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || |||||||||||| | ||||| |||||| Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGTCCTG 3980 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || || ||| | |||||| | ||| | ||| | | Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| || ||| ||||| ||||| || ||||||||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || ||| || ||| | ||||||| | | | | | ||||||||| Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || || ||||| ||| ||||| ||||| || Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTG 3752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || ||||| || | || ||| | ||| | || | | Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| || || ||||||||||| || |||||||||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || ||||||||| | ||||| | | | | | ||||| ||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 26949 ATTCAAAAAGAATCTAC 26965 || ||||||||||| || Sbjct 4924 ATCCAAAAAGAATCCAC 4908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || || ||| | ||||| | ||| | || | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| ||||| ||||||||||| || || || || ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || |||||| ||||| ||||| | | | | | | || || || Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || ||||||||||| || | || |||| ||| Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTG 4436 >seq5580 Length=7482 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 ||| |||||||| || ||||| ||||| |||||||| || | || ||||| | ||| Sbjct 5337 GTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCAT 5396 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 ||| |||||||| ||| | | ||| || |||| | | |||| ||| || || Sbjct 5397 AAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAAGAGCCG 5456 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGAC 119824 ||||| || ||||| ||||| | ||| | | | |||||||| | ||| || || Sbjct 5457 GTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTAC 5516 Query 119825 CGGTAAAGCATTGGTAAAGAAATC 119848 ||||||||||| ||| ||||| || Sbjct 5517 CGGTAAAGCATCGGTCAAGAATTC 5540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478299639716880