Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq7813 104 6e-17
seq5375 96.9 9e-15
>seq7813
Length=5936
Score = 104 bits (114), Expect = 6e-17
Identities = 314/475 (66%), Gaps = 10/475 (2%)
Strand=Plus/Minus
Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897
|| ||||||||||| ||| | || || || || || |||| || || ||||| |||
Sbjct 2336 GGAGCGTTTGCTATTTATTTGGAACCGTGGCACGCTGACGTTTTCGAATTCCTTGATCTC 2277
Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957
||| ||||| || ||||| ||| | || |||||| | || || ||||| ||| |
Sbjct 2276 AAGAAGAACACTGGTAAAGAAGAACAAAGGGCGCGTGATTTATTTTACGCACTGTGGATG 2217
Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT--TTTGCCCAC 364015
||||| | |||||| ||||| || | | | ||| || | | | | |||||
Sbjct 2216 CCTGACGAGTTTATGCGCCGCGTTGA--AAAGAACGAAATGTGGAGTTTGATGTGCCCTG 2159
Query 364016 ACGAATGTCCAGGTCTTTC-CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074
||||| || || ||| | || ||||||| || | | || ||| ||||| ||
Sbjct 2158 CAGAATG-CCCGGGCTTGCATGACCTATGGGGAGAGAAATTTGAAGCTTTATACCGTCAG 2100
Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCAT 364133
|| ||||| ||||| || ||| | ||| ||| || ||| | || |||| || ||
Sbjct 2099 TACGAATCCGAGGGCAAATATCG-GCGTCAAGTTCGTGCCCAGCAACTTTGGTCGGCTAT 2041
Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193
|| || || || | || || || || || || || | ||||| ||| | || |||||
Sbjct 2040 TATTGACTCCCAAGTGGAAACGGGCACGCCTTACATCCTCTACAAGGATGCCTGTAACCG 1981
Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTA 364252
|| || || ||||| |||| || || | ||| | | || || ||||| || |||
Sbjct 1980 AAAATCTAATCAGCAAAACCTGGGAACCA-TCAAATGCTCGAATCTGTGTACGGAAATTG 1922
Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307
| ||||| || |||| ||||| | || || || || | || || || || ||
Sbjct 1921 TCGAATATTCCTCTCCGGACGAAATAGCTGTCTGCAATTTGGCATCCATTGCTCT 1867
>seq5375
Length=21980
Score = 96.9 bits (106), Expect = 9e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665
|| || | ||||||| | ||| ||||| || | || || |||||||| || ||
Sbjct 1350 ATCAAAACCAACCCAGATGATCGCCGCATGGTTTTAAGCGCCTGGAACCCTTGCGCCTTA 1291
Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT 111724
||||||||||||| || || || || || ||||||||||| | ||||
Sbjct 1290 CCCCAAATGGCACTTCCTCCTTGCCA-CTGCCTAGCGCAGTTTTATGTGGCCAACGGCGA 1232
Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784
|||||||||||||||||||||||| || |||||||| || | || || || || |||||
Sbjct 1231 GCTTTCATGCCAAATGTATCAGCGTTCAGCTGATATGGGCTTAGGGGTGCCTTTCAATAT 1172
Query 111785 TGCAAGTTACGC 111796
|| ||||| ||
Sbjct 1171 CGCCAGTTATGC 1160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302341143111878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |