Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7813 104 6e-17 seq5375 96.9 9e-15 >seq7813 Length=5936 Score = 104 bits (114), Expect = 6e-17 Identities = 314/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || ||||||||||| ||| | || || || || || |||| || || ||||| ||| Sbjct 2336 GGAGCGTTTGCTATTTATTTGGAACCGTGGCACGCTGACGTTTTCGAATTCCTTGATCTC 2277 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| || ||||| ||| | || |||||| | || || ||||| ||| | Sbjct 2276 AAGAAGAACACTGGTAAAGAAGAACAAAGGGCGCGTGATTTATTTTACGCACTGTGGATG 2217 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT--TTTGCCCAC 364015 ||||| | |||||| ||||| || | | | ||| || | | | | ||||| Sbjct 2216 CCTGACGAGTTTATGCGCCGCGTTGA--AAAGAACGAAATGTGGAGTTTGATGTGCCCTG 2159 Query 364016 ACGAATGTCCAGGTCTTTC-CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 ||||| || || ||| | || ||||||| || | | || ||| ||||| || Sbjct 2158 CAGAATG-CCCGGGCTTGCATGACCTATGGGGAGAGAAATTTGAAGCTTTATACCGTCAG 2100 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCAT 364133 || ||||| ||||| || ||| | ||| ||| || ||| | || |||| || || Sbjct 2099 TACGAATCCGAGGGCAAATATCG-GCGTCAAGTTCGTGCCCAGCAACTTTGGTCGGCTAT 2041 Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193 || || || || | || || || || || || || | ||||| ||| | || ||||| Sbjct 2040 TATTGACTCCCAAGTGGAAACGGGCACGCCTTACATCCTCTACAAGGATGCCTGTAACCG 1981 Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTA 364252 || || || ||||| |||| || || | ||| | | || || ||||| || ||| Sbjct 1980 AAAATCTAATCAGCAAAACCTGGGAACCA-TCAAATGCTCGAATCTGTGTACGGAAATTG 1922 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | ||||| || |||| ||||| | || || || || | || || || || || Sbjct 1921 TCGAATATTCCTCTCCGGACGAAATAGCTGTCTGCAATTTGGCATCCATTGCTCT 1867 >seq5375 Length=21980 Score = 96.9 bits (106), Expect = 9e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || || | ||||||| | ||| ||||| || | || || |||||||| || || Sbjct 1350 ATCAAAACCAACCCAGATGATCGCCGCATGGTTTTAAGCGCCTGGAACCCTTGCGCCTTA 1291 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT 111724 ||||||||||||| || || || || || ||||||||||| | |||| Sbjct 1290 CCCCAAATGGCACTTCCTCCTTGCCA-CTGCCTAGCGCAGTTTTATGTGGCCAACGGCGA 1232 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 |||||||||||||||||||||||| || |||||||| || | || || || || ||||| Sbjct 1231 GCTTTCATGCCAAATGTATCAGCGTTCAGCTGATATGGGCTTAGGGGTGCCTTTCAATAT 1172 Query 111785 TGCAAGTTACGC 111796 || ||||| || Sbjct 1171 CGCCAGTTATGC 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302341143111878