Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6222 116 3e-21 seq7813 107 2e-18 >seq6222 Length=12937 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| || || || || | ||| || || ||||| || |||||||| Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | ||| ||||| ||| ||||||| || || || || || || Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| |||| | || | || || | || ||||| Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| ||||| || |||||||||||||| Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| || ||||| | ||| || || || |||||||||||||| Sbjct 5105 GCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGA 5164 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||||| ||| | |||||||| |||||||| || || Sbjct 5165 CAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGG 5224 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||||||||| ||| ||| || |||| | || | ||||| | | ||| | Sbjct 5225 GATACCTTCTTTGTC-TTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTA 5283 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| || || || || || || || ||||| || ||||| Sbjct 5284 CTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| || || || || | ||| || || ||||| |||||||| || | Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | || ||||| ||| | || ||||| || || || ||||| Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || |||| | ||| | Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || | ||||| |||||||| |||||| Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||| ||| | || || || || || |||||||| ||| | Sbjct 3966 CCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 4025 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||| ||||||||| || | || ||||| || || || ||||| Sbjct 4026 AAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGA 4085 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | ||| | || || | | |||| Sbjct 4086 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACT 4145 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || |||||||| ||||||||||| Sbjct 4146 TCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || || ||||||||||||||||| || | Sbjct 4650 CCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGAC 4709 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | || ||||| ||| | |||||||| || || || ||||| Sbjct 4710 AGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGA 4769 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| || |||| | ||| | ||| |||| | |||| Sbjct 4770 ATGCCTTCTTTATC-TTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGAC 4828 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || |||||||| |||||||| ||||| Sbjct 4829 TTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||||||||| || || || | ||| || || ||||| || |||||||| | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || |||||||| ||| |||| | ||| || ||||| || || Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || |||| | || | || || | | ||| | Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | ||| || ||||| || ||||| Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 >seq7813 Length=5936 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 |||||||| || ||||| ||||| | ||| || || ||| |||| | ||| ||||| || Sbjct 1167 TGATTGACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAG 1226 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 | ||||| |||||| || || |||| ||||| || || | || || |||||| || Sbjct 1227 GCTTCAATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCT 1286 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | |||||| ||||| || | ||||| || || | | || || | | ||| ||| Sbjct 1287 AACAATAACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCC 1346 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAAT 145278 || || | | || |||| | |||||| ||||||||||| || Sbjct 1347 CAAAGATCACTTGGAGTCACATTCCACATATCGTACTGCAAGAT 1390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 145617 TATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTA 145676 |||| | || || || |||||||| || || || | || || | | |||| | Sbjct 1862 TATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGA 1921 Query 145677 CGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCC 145736 | || || | |||| ||| ||||||||||||||||| |||||||||||| ||| | Sbjct 1922 CAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTC 1981 Query 145737 TGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 ||| || || ||||||||||| ||||| || ||| || ||||| || Sbjct 1982 GGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTG 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471655079199360