Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6222 131 1e-25 seq22284 113 3e-20 seq21316 105 4e-18 seq13107 105 4e-18 seq3468 104 2e-17 seq9939 96.9 2e-15 seq96 86.0 4e-12 >seq6222 Length=12937 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| |||||| | ||||| ||||| ||| || ||||| || ||||| |||| Sbjct 4876 TACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAG 4935 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || |||||||| || || || || | ||||||||||||| | Sbjct 4936 ACAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAG 4995 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| ||| || || | | || || |||| Sbjct 4996 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAA 5055 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || ||||||||||| ||||| || |||||| Sbjct 5056 CTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| |||||||| ||||| ||||| ||| || ||||| ||||||||||||| Sbjct 4420 TACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAG 4479 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | ||| || ||||| || || || |||||||| || | || Sbjct 4480 ACAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGG 4539 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || || || || | | || || |||| Sbjct 4540 GAATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAA 4599 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || ||||| || |||||||| || ||||| Sbjct 4600 CTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| |||||| | ||||| ||||| ||| || ||||| ||||||||||||| Sbjct 4192 TACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAG 4251 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || ||| |||| || || ||||| || || || |||| ||||||||||||| || Sbjct 4252 ATAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGG 4311 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| || || || | | || || || | Sbjct 4312 GAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGA 4371 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | || |||||||| |||||||| Sbjct 4372 CTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| || || ||||||||||| ||||| ||||||| ||| |||| || Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| ||||| || |||| ||||||||||| | || | ||||||||| || | Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || || |||| | ||| || | ||| ||||| || || || || || Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | ||||| ||||| || ||||| Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| |||||||| || ||| || || ||||| |||||||| ||| Sbjct 5106 CCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGAC 5165 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || ||||| || || || || |||| ||||| || || | |||| Sbjct 5166 AACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGG 5225 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| |||||| || || || | | ||||| | || ||| Sbjct 5226 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACT 5285 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||||| || ||||||| ||| |||||||| || ||||| Sbjct 5286 TCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||| |||||||| ||||| ||||| || ||||| || || ||||| ||| | Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || ||||| || ||||| || || | ||||| ||||||| || | ||||| || Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| |||||| || || || | | || || ||||||||| || || || Sbjct 3869 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGAT 3928 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| |||||||||||||||||||| || ||||| Sbjct 3929 GGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| || | ||||||||| || || || || ||||| || | Sbjct 3964 TACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGG 4023 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || ||||| || || |||||||| || | ||||||||||||| | Sbjct 4024 ACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAG 4083 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||||| ||| || |||| | || ||| ||| | Sbjct 4084 GAATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGA 4143 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || || | |||||| || || |||||||| Sbjct 4144 CTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 >seq22284 Length=545 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 468 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCGT 409 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 408 GGCGGTATTTAGCCTTA 392 >seq21316 Length=3581 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| |||| |||| ||||||||||||||| ||||| || ||| |||||| Sbjct 1985 GCCCGTTCCCCTGGCAGTGGGTTCGCTAGATAGTAGGTAGGGACAGTGGGAATGTCGTTA 1926 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| || ||||||||||||||||||||| Sbjct 1925 ATCCATTCGTGTGCGTCACTAATTAGATGACGA 1893 >seq13107 Length=4359 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| |||| |||| ||||||||||||||| ||||| || |||||||||| Sbjct 4126 GCCCGTTCCCCTGGCAGTGGGTTCGCTAGATAGTAGGTAGGGAAAGTGGGAATCTCGTTA 4067 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| |||| |||||| |||||||||||| Sbjct 4066 ATCCATTCGTGCGTGTCACTTATTAGATGACGA 4034 >seq3468 Length=50068 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| ||||| | | | |||| || |||||||| ||||| || Sbjct 38468 CCTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAG 38409 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||||||||||| ||||| ||||| ||||| ||||| ||| ||||| Sbjct 38408 ATCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTT 38349 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||| ||| | || || || | || || || ||||||||||| || || ||| Sbjct 38348 TCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACG 38289 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 38288 AAGATCTGCATG 38277 >seq9939 Length=18230 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||||||||| || | |||| ||||||||||||||| ||||| || ||||||||| Sbjct 9259 GCCCGTTCCTCTGTCAGTGGGTTCGCTAGATAGTAGGTAGGGACAGTGGGTATCTCGTTA 9200 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| ||||||||||||||||||||| || Sbjct 9199 ATCCATTCGTGCGCGTCACTAATTAGATGATGA 9167 >seq96 Length=47675 Score = 86.0 bits (94), Expect = 4e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || |||||||| || || || ||||| || ||| ||| ||||| ||||| ||||| Sbjct 2965 TTTGGTTGCGAACTGGGTGCGCAAACGCAATTCGATTTCAAGAACGATCGCTTTATCGTC 2906 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| | ||| || || | ||||| || | | | || |||||||| |||||| Sbjct 2905 AACGGTGCCCATGACGCTTCGAAGCTTCAAGGGATGTTGGATGGCTTTATCAAGAAGTTT 2846 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGA 6507 ||||| || | | |||||||| || || |||| ||| | || | |||||| Sbjct 2845 GTGCTCTGCCCTGGCTGCGATAATCCCGAAACCGTTCTTTTGGTCAATGCCAAGA 2791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334699702175699