Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5580 262 5e-65 seq7813 113 6e-20 >seq5580 Length=7482 Score = 262 bits (290), Expect = 5e-65 Identities = 530/786 (67%), Gaps = 3/786 (0%) Strand=Plus/Plus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 || ||| || || | ||||||||||| ||||| || || || ||||| || || || Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473 |||||| || || |||||||| || ||||| || || ||| ||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 | | ||| | | | |||||||| || || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 ||||| || | | || || | ||| | || | |||||||| || ||| || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 32653 || || || || | || | | | ||| | | |||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 ||| | || || |||||||| || | ||||||||| | ||| | ||||||||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || || |||||||| | || | ||| || ||||| || ||||| ||||| || ||||| Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCT 32830 || ||||| || || || || |||||||| || | || ||| || |||| || | | Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 |||| ||||| || ||||||||||||||||| ||||||||||| | || || || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||| || || | ||| |||| | | | | ||| || || || ||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 ||||||||| |||||||||||||| ||||| || || || |||||||| || | || || Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || || ||| |||||| |||||| || | || |||||||| || || || ||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 ||| ||||| || ||||| || || | | || | ||||| || ||| ||| || | Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTC 6095 Query 33131 CCAATC 33136 |||||| Sbjct 6096 CCAATC 6101 >seq7813 Length=5936 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| || || ||| ||| | || || ||||| ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || ||||||||||| |||||||| |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||||||| || ||||||||||| || || || ||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 || ||| | | |||| | | |||||| |||| || | ||| | ||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 62369 TC 62370 || Sbjct 1353 TC 1354 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 ||||| ||| | ||||||||||| ||||| || ||||| || ||||||||||| || | Sbjct 3046 GACGAGGCGTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACA 3105 Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63578 |||||||||| || || || ||||| || ||||| ||||| || |||| ||| | Sbjct 3106 GTAGATTGTAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTC 3165 Query 63579 GCATTAACATGTGCTGAGGTCTTTCAAC 63606 ||| ||||| ||||| || | |||||| Sbjct 3166 TCATCAACATATGCTGCGGACGTTCAAC 3193 Score = 105 bits (116), Expect = 8e-18 Identities = 392/607 (65%), Gaps = 27/607 (4%) Strand=Plus/Plus Query 62628 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTA 62684 |||| |||| || ||| | || || || || || || || | ||| | |||| | Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGA--- 1804 Query 62685 CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC----CATCTATTACAAACATG 62740 ||||| || || || || |||| ||| ||| | || | | ||| | || ||||| Sbjct 1805 CTTTGGTGACTTCTTTGAGCTTGACAAAGTCATA-CGTCTTATCTTCTTTCACGAACATA 1863 Query 62741 TTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 62800 |||| |||| ||||||| ||| || || |||| || | | | | ||||| | Sbjct 1864 TTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACA 1923 Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || || || || ||||| || ||||||||||| | ||||| |||||| ||| | Sbjct 1924 ATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGG 1983 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| |||||||| || || ||| | || || || ||||| | || || || ||||| Sbjct 1984 TTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATA 2043 Query 62921 GCTTTCCAGA------CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCG 62974 || ||| | | | ||| | | | ||||| | | || |||| Sbjct 2044 GCCGACCAAAGTTGCTGGGCACGAACTTGACGCCGATATTTG---CCC---TCGGATTCG 2097 Query 62975 TA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATT 63032 || | ||||| || | ||| || | |||||||| | | | || || || |||| Sbjct 2098 TACTGACGGTATA-AAGC-TTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATT 2155 Query 63033 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63092 | | || |||||||| |||| | ||| | | || || |||||| |||| Sbjct 2156 CTGCAGGGCACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAG 2215 Query 63093 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 | ||||| || || ||||| ||| | | || ||||| || || || || ||||| | Sbjct 2216 GCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCT 2275 Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 | ||||| ||||| | | || |||| |||||||||||||| || || || | ||| Sbjct 2276 TGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGCAAACGCTC 2335 Query 63213 CAGGCCG 63219 |||| || Sbjct 2336 CAGGACG 2342 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 |||||| ||||||| || || |||||||| || |||| ||||||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || |||||||| | |||||||| |||| | || || ||| ||||| | ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || ||||| | | |||||| ||||||||||| ||||| || || || ||||| ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 62603 C 62603 | Sbjct 1642 C 1642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633151794068400