Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6222 158 1e-33 seq3468 100 2e-16 >seq6222 Length=12937 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| ||| ||||||| | ||||| ||| ||||| Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||||||||| ||||| ||||| Sbjct 4588 GACACCATTGAAAACGTCA---AAGCCAAGATCCAA-GACAAAGAAGGCATTCCCCCTGA 4533 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || || |||||||| ||| | ||||| | ||| || || ||||| Sbjct 4532 CCAACAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTA 4473 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| |||||||||||||| || || || || || Sbjct 4472 CAATATCCAAAAAGAATCCACCCTTCACTTGGTTCT 4437 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| ||| ||||||| | ||||| ||| | ||| Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||| || ||||||||||| ||||| || || Sbjct 4360 GACACCATTGAAAACGTCA---AAGCCAAAATCCAA-GACAAAGAAGGCATTCCCCCCGA 4305 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || || |||||||| || ||||| | ||| || | ||||| Sbjct 4304 TCAACAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTA 4245 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||||| |||||||||||||| || || || || ||| Sbjct 4244 CAATATCCAAAAAGAATCCACCCTTCACTTGGTTCTA 4208 Score = 132 bits (146), Expect = 4e-26 Identities = 159/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||| || || | || || ||||||| ||| | || Sbjct 5333 AATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTC 5274 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| ||| ||||||||||| || || |||| Sbjct 5273 GGATACCATTGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAAGGTATCCCCCCTG 5218 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || | ||||| || ||||| ||||| ||||||| ||| || || |||| Sbjct 5217 ACCAGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATT 5158 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| ||||| ||||||||||| || ||||| || Sbjct 5157 ACAACATTCAGAAAGAATCCACCCTGCATTTGGT 5124 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || | ||||| | ||||| || | || Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||| ||||| ||||| || || ||| Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||| || |||||||||| ||||||| || ||| ||||| Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || ||| |||| || Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGTCCT 3981 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || || | ||||| | ||||| || | || Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| ||| ||| |||| |||| ||| || |||||||| ||||| ||||| Sbjct 4816 GACACTATTGAGAACGTCA---AAGCCAAAATTCAA-GATAAAGAAGGCATTCCTCCTGA 4761 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||| |||||||||||||| ||||| | ||| || || || || Sbjct 4760 TCAACAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTA 4701 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||| ||||| || || ||||| || || Sbjct 4700 CAACATTCAAAAGGAATCTACACTCCATTTGGTCCT 4665 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || |||| || | ||||| ||| |||| Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || || ||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || ||||||||||| ||||| | || || || || ||||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || || || || || Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCT 4893 >seq3468 Length=50068 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||||||||| ||||| ||||||| | || || ||| | Sbjct 38275 ACCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 38334 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||||||||| | ||| |||||| ||||| ||||| || || || || Sbjct 38335 TCAGACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGAT 38394 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| || | || || |||||||||||||| ||||| Sbjct 38395 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGA 38432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433007807034635