Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq4723 562 1e-155 seq9686 304 5e-78 >seq4723 Length=43540 Score = 562 bits (622), Expect = 1e-155 Identities = 669/911 (73%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 44761 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 44820 ||||| |||||| |||||| || || || |||||||| || ||||| ||||| || | Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227 Query 44821 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 44880 ||||||| ||||||||||||||||||||| |||||||| || || || || || |||| Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167 Query 44881 CGACATAATGCAGTCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAT 44940 ||||| || | ||||| || ||||| || ||||| || ||||||||| ||||||| | Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107 Query 44941 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCAGGTAAGCCGATTTTATGGCCT 45000 |||| || | ||||||||||||||| |||||||||| ||| || || || ||||||| Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047 Query 45001 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 45060 | || || || |||| |||||||||||| || |||||||| || ||||| |||||||| | Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987 Query 45061 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCTGTACGCATACTTTCGTCGC 45120 |||| | ||| |||||| | || || ||||||||||| || |||||| | ||||||| Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927 Query 45121 GATAGATAATCGGGGATTCAGTAACATTCACGCCGGAGGTGAACTCAAACAGGACTCTGG 45180 | ||| ||||| || || | || | ||||||| |||||||| || ||| || | Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867 Query 45181 CGTCGTTCTCGTATTGTTTTCCCCAGGCCAGTGCTTTGGCATTAACTTCCGGAGCCACAC 45240 |||| | ||| ||||||| ||||| ||||| | ||||| ||||||||||| | || | Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807 Query 45241 CGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCT 45300 ||||||| || || || ||||||||||||||||| |||||||||||||| | ||| |||| Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747 Query 45301 TTCCTGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCTGTAAGGACGCCGAGCC 45360 | || ||||| ||||| | || |||||| ||||| || || |||| |||||||| | Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687 Query 45361 CGTATTTGTGCCACGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 45420 | |||||||| ||||| || || ||||| | | | ||||| || || || || Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627 Query 45421 GCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGTTCAGAGGCTTTCTGTTTCAGGAA 45480 ||||||||| || |||||||||| || ||| ||||| || ||||| Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582 Query 45481 TCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 45540 || |||||||| || |||||| || |||| || || | ||||| ||| || Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522 Query 45541 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTGTCCAGGGCAATCAG 45600 || || | || |||||||| | | ||| ||||||| || || | || || | || Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462 Query 45601 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 45660 || | || | || | || ||||| || |||| | | ||||||||| ||||| Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402 Query 45661 ACGTTCTGCAG 45671 ||| || |||| Sbjct 1401 ACGCTCGGCAG 1391 >seq9686 Length=37809 Score = 304 bits (336), Expect = 5e-78 Identities = 359/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 59021 ATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCATGAG 59080 ||||| || |||| ||||| | || ||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 59081 GATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 59140 ||||| ||||| | || |||||||| |||||||| ||||| | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 59141 TCACGCCCGCAGTGCTGTGACGATGATGCGATGGTGATATGCGGGTGTATAGCCCGCCTT 59200 || || || ||||| ||||| |||||||||||||| | |||||||| || ||| | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 59201 TACCGGAACAATCGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 59260 || |||||||||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 59261 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 59320 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 59321 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 59380 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 59381 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 59439 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 59440 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 59499 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 59500 TAA 59502 ||| Sbjct 629 TAA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192501305099600