Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 352 3e-92
seq1650 118 1e-21
seq1347 109 6e-19
>seq5580
Length=7482
Score = 352 bits (390), Expect = 3e-92
Identities = 584/833 (70%), Gaps = 9/833 (1%)
Strand=Plus/Plus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| ||||| | |||||| || ||| | | | || | ||| || || |
Sbjct 5275 TAGAAATCCGCATCCAATGTAAAAAC-TTGGCTT-TCGCGGCT-AGCCATCACGCCGCTC 5331
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||||||||| || ||||| || ||||||||||| ||||| ||||| || || || |
Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAAT-GTT 5390
Query 92863 TTCACTA--GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919
||| || || || || || | || || ||| ||| || | ||| |||
Sbjct 5391 TTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAA 5450
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
| | || || || || || |||||||| |||||||||||| ||||| || || |
Sbjct 5451 GAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510
Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
||| |||| ||| ||||||||||| |||| ||| || || || || || | |||
Sbjct 5511 GGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGAT 5570
Query 93040 TTCTATTACTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098
|| | || | | | | | ||||| | || | || |||||||| | ||| ||||
Sbjct 5571 TTGCGTAACGCGAGCGACGCCG-GGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAA 5629
Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158
| ||| ||| ||||| ||||| || || || | ||| ||| || || | ||| || |
Sbjct 5630 AATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCA 5689
Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218
|| |||| ||||| ||||| || || || |||||| ||||| ||||| ||||| |
Sbjct 5690 TCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCT 5749
Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278
| ||||||||||| || | | || || |||||| ||| | || ||||||||
Sbjct 5750 CGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCATT 5809
Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338
| || ||||||||||| || ||||| | |||||| || ||||||||||| || ||
Sbjct 5810 TAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAGCA 5869
Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398
| | ||| || | | ||| || || || |||||||| || ||||||||||| ||||
Sbjct 5870 TCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAAT 5929
Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458
| | || ||||| ||||| ||||| ||||||||||| | ||||| | | ||||||||
Sbjct 5930 GAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTT 5989
Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518
|||| | ||||| ||| || | ||||||||||| || ||||| || || ||||| ||||
Sbjct 5990 CTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAAG 6049
Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571
|||| | || | | || || || |||||| ||| | ||| |||||||||
Sbjct 6050 CCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCAATCG 6102
Score = 111 bits (122), Expect = 2e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640
|| || ||||| |||||||| | ||||| || || ||||| ||||| |||||||| | |
Sbjct 6236 TTCGACAGATCTACTTCTTCAGCGGTCCAGAAGGAAGCTTCAGCTTTCTTGTACATTTGC 6295
Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700
|||||||| || || | ||| ||||| | |||||| ||||||||||| || || |||||
Sbjct 6296 CATATGTCGTGGTACTTAATAGGAAAAAGGACAAAGCGATTAGGGTTTTCCTTGAGTAAA 6355
Query 93701 GGCTCT 93706
|| |||
Sbjct 6356 GGTTCT 6361
>seq1650
Length=29231
Score = 118 bits (130), Expect = 1e-21
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325
||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||
Sbjct 6812 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCGATTGGGAGCGTG 6870
Query 126326 GGTTCGAACCCCACACCTGACAAATTATT 126354
||||||| ||||||||||| |||||| ||
Sbjct 6871 GGTTCGAGCCCCACACCTGGCAAATTTTT 6899
Score = 118 bits (130), Expect = 1e-21
Identities = 78/84 (93%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325
||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||
Sbjct 7069 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCGATTGGGAGCGTG 7127
Query 126326 GGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||| ||||
Sbjct 7128 GGTTCGAACCCCACACCTGGCAAA 7151
>seq1347
Length=71634
Score = 109 bits (120), Expect = 6e-19
Identities = 79/89 (89%), Gaps = 3/89 (3%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||||||| |||||||||||| |||||||||||| ||| | ||| ||
Sbjct 14549 GTCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCCCAATTGGGGTCG 14491
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTA 126352
||||||||||||||||| |||||| ||||
Sbjct 14490 TGGGTTCGAACCCCACATCTGACACATTA 14462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556438776081960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |