Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5580 352 3e-92 seq1650 118 1e-21 seq1347 109 6e-19 >seq5580 Length=7482 Score = 352 bits (390), Expect = 3e-92 Identities = 584/833 (70%), Gaps = 9/833 (1%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| ||||| | |||||| || ||| | | | || | ||| || || | Sbjct 5275 TAGAAATCCGCATCCAATGTAAAAAC-TTGGCTT-TCGCGGCT-AGCCATCACGCCGCTC 5331 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||||||||| || ||||| || ||||||||||| ||||| ||||| || || || | Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAAT-GTT 5390 Query 92863 TTCACTA--GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 ||| || || || || || | || || ||| ||| || | ||| ||| Sbjct 5391 TTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAA 5450 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | | || || || || || |||||||| |||||||||||| ||||| || || | Sbjct 5451 GAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 ||| |||| ||| ||||||||||| |||| ||| || || || || || | ||| Sbjct 5511 GGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGAT 5570 Query 93040 TTCTATTACTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 || | || | | | | | ||||| | || | || |||||||| | ||| |||| Sbjct 5571 TTGCGTAACGCGAGCGACGCCG-GGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAA 5629 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | ||| ||| ||||| ||||| || || || | ||| ||| || || | ||| || | Sbjct 5630 AATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCA 5689 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || |||| ||||| ||||| || || || |||||| ||||| ||||| ||||| | Sbjct 5690 TCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCT 5749 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | ||||||||||| || | | || || |||||| ||| | || |||||||| Sbjct 5750 CGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCATT 5809 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | || ||||||||||| || ||||| | |||||| || ||||||||||| || || Sbjct 5810 TAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAGCA 5869 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | | ||| || | | ||| || || || |||||||| || ||||||||||| |||| Sbjct 5870 TCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAAT 5929 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | || ||||| ||||| ||||| ||||||||||| | ||||| | | |||||||| Sbjct 5930 GAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTT 5989 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 |||| | ||||| ||| || | ||||||||||| || ||||| || || ||||| |||| Sbjct 5990 CTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAAG 6049 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 |||| | || | | || || || |||||| ||| | ||| ||||||||| Sbjct 6050 CCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCAATCG 6102 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || ||||| |||||||| | ||||| || || ||||| ||||| |||||||| | | Sbjct 6236 TTCGACAGATCTACTTCTTCAGCGGTCCAGAAGGAAGCTTCAGCTTTCTTGTACATTTGC 6295 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 |||||||| || || | ||| ||||| | |||||| ||||||||||| || || ||||| Sbjct 6296 CATATGTCGTGGTACTTAATAGGAAAAAGGACAAAGCGATTAGGGTTTTCCTTGAGTAAA 6355 Query 93701 GGCTCT 93706 || ||| Sbjct 6356 GGTTCT 6361 >seq1650 Length=29231 Score = 118 bits (130), Expect = 1e-21 Identities = 81/89 (91%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||| Sbjct 6812 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCGATTGGGAGCGTG 6870 Query 126326 GGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| ||||||||||| |||||| || Sbjct 6871 GGTTCGAGCCCCACACCTGGCAAATTTTT 6899 Score = 118 bits (130), Expect = 1e-21 Identities = 78/84 (93%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||| Sbjct 7069 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCGATTGGGAGCGTG 7127 Query 126326 GGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||| |||| Sbjct 7128 GGTTCGAACCCCACACCTGGCAAA 7151 >seq1347 Length=71634 Score = 109 bits (120), Expect = 6e-19 Identities = 79/89 (89%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||||||| |||||||||||| |||||||||||| ||| | ||| || Sbjct 14549 GTCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCCCAATTGGGGTCG 14491 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||||||||||||| |||||| |||| Sbjct 14490 TGGGTTCGAACCCCACATCTGACACATTA 14462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556438776081960