Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6222 159 3e-34 seq7813 100 2e-16 seq3468 100 2e-16 seq5580 82.4 6e-11 >seq6222 Length=12937 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || ||| ||||| | ||||| ||| | | Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| ||||||||||| || ||||| ||||||||| Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| |||||||| ||| ||||| | ||||| |||||| Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || | ||| |||| |||| |||| || ||| Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGGT 3965 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| ||||| ||||| | ||||| || || | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || ||||||||||| || || || ||| | || |||||||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||||||| | || || ||| | || ||||| || ||| Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGGT 4193 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||| ||||| ||||| | ||||| || | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || || |||||||| || || ||||| || || ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| || | || || || ||| | || |||||||| Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||||||| | || || ||| |||| ||||| || ||| Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGGT 4421 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || || || || | || | ||||| || | || Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| |||||||| || || ||||| ||||||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || |||||||| || || || ||| ||| | || || |||||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||||||| | || || ||| | || ||||| || ||| Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGGT 4877 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||| | || || || ||| ||||| | ||||| ||| | || Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| ||||||||||| || || || ||||| || |||||| Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||||||||| || || || || ||| | || || |||||| Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||||| || | ||||| || Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGT 4668 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || ||||| |||| | ||||| ||| | || Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||||||||||||||| |||||||| |||||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || || || || ||| || ||| | ||||| || || Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||| || | ||||| || ||||| Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCG 3750 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || ||||| || | | Sbjct 5332 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCG 5273 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| |||||||||||||| || ||||| || || || || Sbjct 5272 GATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAG 5213 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || || ||| || || | || ||||||||| Sbjct 5212 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAAC 5153 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| |||||||||||| | ||||| || ||||| Sbjct 5152 ATTCAGAAAGAATCCACCCTGCATTTGGTATTGCG 5118 >seq7813 Length=5936 Score = 100 bits (110), Expect = 2e-16 Identities = 305/463 (66%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 129696 AATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGC 129755 ||| || |||||||||||||| || |||||| || ||||||||||| | Sbjct 1872 AATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGT 1931 Query 129756 GCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGC 129815 |||| ||| ||| ||||| |||| | | |||||| ||| ||| || || Sbjct 1932 ACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGC 1991 Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875 ||| ||||| | ||||| |||||||||||||| ||||| | || | ||| | | || Sbjct 1992 ATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCC--GAC 2049 Query 129876 CAA-GTCTCGAGCCTTGATCT-GTCTTACAAATTTGCCACATTTCTCGTA-TGCCAC-AT 129931 ||| || | | | || || | | | ||||||| ||||| || | || Sbjct 2050 CAAAGTTGCTGGGCACGAACTTGACGCCGATATTTGCCCTCGGATTCGTACTGACGGTAT 2109 Query 129932 ACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAA---CGGCGATTCACGCGGAC 129988 | || | ||||||| || || | || |||| ||| |||| || | Sbjct 2110 AAAGCT--TCAAATTTCTCTCCCCATAGG---TCATGCAAGCCCGGGCATTCTGCAGGGC 2164 Query 129989 ACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||||||||||||||| | | | ||| || || ||||||| || || | ||||| Sbjct 2165 ACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACA 2224 Query 130049 GGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAA 130108 | ||||| || ||||| ||||| || || || ||| |||| || || |||| Sbjct 2225 GTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAA 2284 Query 130109 GGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGC 130151 |||| ||| ||| ||| |||||||||||||| | |||||| || Sbjct 2285 GGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327 >seq3468 Length=50068 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || ||||| || |||| ||||| || || | | Sbjct 38278 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 38337 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| ||||||||||| || || || ||||||||| Sbjct 38338 GACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 38397 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||||||||| || || || | | || | || || |||||| Sbjct 38398 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACAAC 38457 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 38458 ATCCAGAAAG 38467 >seq5580 Length=7482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/141 (73%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140 ||||| || ||||| || || ||| |||||| |||| || | | |||| | |||| Sbjct 5753 GTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAGAGAGGT 5694 Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACACC 117200 | ||||| ||||| || ||| |||||| | || ||||||||||| ||||| || | Sbjct 5693 TTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTGCATTGC 5634 Query 117201 GATTTTGCGTGC---ATGTAC 117218 |||||||| ||| |||||| Sbjct 5633 GATTTTGCTTGCCTTATGTAC 5613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419417856291385