Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq985 113 9e-20 seq5580 95.1 2e-14 seq2753 95.1 2e-14 seq17753 93.3 9e-14 seq5257 91.5 3e-13 seq4878 91.5 3e-13 seq1575 91.5 3e-13 seq6298 89.7 1e-12 seq18336 87.8 4e-12 >seq985 Length=45870 Score = 113 bits (124), Expect = 9e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || || || || || |||| ||||||||| | || ||||| |||||| ||| | ||| Sbjct 12508 TTAAAACGAAAACTCGTTCGAGAAATTAAAATTGCCCAGTTGGCTGGTTCGGTAGCTGAA 12567 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCAC 218746 ||| | || ||||||||||| || || || ||| ||||| | | |||| | Sbjct 12568 CATTCAGCTTATCATCACGGTGA--AGCCTCCTTGATGGGGACCATTATTAACTTGGCGC 12625 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 || ||| ||||||| ||||| || ||||||||||| || | ||||||||||| ||| Sbjct 12626 AGAACTTTGTGGGCTCGAACAATATCAACTTGCTGCTGCCAATTGGTCAGTTTGGCACTC 12685 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861 |||| |||||| || || ||| || | | ||||| ||||| || ||||| Sbjct 12686 GTCTGCAGGGTGGCAAAGACGCTGCATCGCCGCGTTATATTTTTACCAAATTGTC 12740 >seq5580 Length=7482 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | |||||| || | || || ||||| |||||||| |||||| | Sbjct 5356 TCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCG 5415 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||||||| |||| | || |||| |||||||| || ||||| | Sbjct 5416 GAATTGTAAATCTTGGGACATTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATG 5475 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT 251717 |||||| ||||| ||| |||||||||||| ||| Sbjct 5476 TACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510 >seq2753 Length=9281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||| Sbjct 2108 CATGTCCCTGTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCCCGGGTTCG 2167 Query 142110 ACCCCCGCCAGAGACGC 142126 | |||| ||| || || Sbjct 2168 AATCCCGGCAGGGATGC 2184 >seq17753 Length=1513 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 617 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 558 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 557 GCCCCACGTTGGGC 544 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 801 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 742 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 741 CCCCACGTTGGGC 729 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1262 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1203 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1202 CCCCACGTTGGGC 1190 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 69 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 10 Query 142562 GCCCCAC 142568 ||||||| Sbjct 9 GCCCCAC 3 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 329 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 270 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 269 CCCCACGTTGGGCGAAAGT 251 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1446 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1505 Query 142563 CCCCAC 142568 |||||| Sbjct 1506 CCCCAC 1511 >seq5257 Length=28961 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 13794 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 13735 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 13734 CCCCACGTTGGGC 13722 >seq4878 Length=16897 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2194 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2253 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2254 CCCCACGTTGGGC 2266 >seq1575 Length=11575 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 11150 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11091 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 11090 CCCCACGTTGGGC 11078 >seq6298 Length=14097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 13626 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 13685 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 13686 CCCCACGTTGGGCGAAAGT 13704 >seq18336 Length=594 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 67 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8 Query 142563 CCCCAC 142568 |||||| Sbjct 7 CCCCAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027038367058989