Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq985 113 9e-20
seq5580 95.1 2e-14
seq2753 95.1 2e-14
seq17753 93.3 9e-14
seq5257 91.5 3e-13
seq4878 91.5 3e-13
seq1575 91.5 3e-13
seq6298 89.7 1e-12
seq18336 87.8 4e-12
>seq985
Length=45870
Score = 113 bits (124), Expect = 9e-20
Identities = 167/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
|| || || || || |||| ||||||||| | || ||||| |||||| ||| | |||
Sbjct 12508 TTAAAACGAAAACTCGTTCGAGAAATTAAAATTGCCCAGTTGGCTGGTTCGGTAGCTGAA 12567
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCAC 218746
||| | || ||||||||||| || || || ||| ||||| | | |||| |
Sbjct 12568 CATTCAGCTTATCATCACGGTGA--AGCCTCCTTGATGGGGACCATTATTAACTTGGCGC 12625
Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806
|| ||| ||||||| ||||| || ||||||||||| || | ||||||||||| |||
Sbjct 12626 AGAACTTTGTGGGCTCGAACAATATCAACTTGCTGCTGCCAATTGGTCAGTTTGGCACTC 12685
Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861
|||| |||||| || || ||| || | | ||||| ||||| || |||||
Sbjct 12686 GTCTGCAGGGTGGCAAAGACGCTGCATCGCCGCGTTATATTTTTACCAAATTGTC 12740
>seq5580
Length=7482
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| |||||||| | |||||| || | || || ||||| |||||||| |||||| |
Sbjct 5356 TCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCG 5415
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||||||| |||| | || |||| |||||||| || ||||| |
Sbjct 5416 GAATTGTAAATCTTGGGACATTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATG 5475
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT 251717
|||||| ||||| ||| |||||||||||| |||
Sbjct 5476 TACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510
>seq2753
Length=9281
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|||||| |||||||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct 2108 CATGTCCCTGTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCCCGGGTTCG 2167
Query 142110 ACCCCCGCCAGAGACGC 142126
| |||| ||| || ||
Sbjct 2168 AATCCCGGCAGGGATGC 2184
>seq17753
Length=1513
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 617 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 558
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 557 GCCCCACGTTGGGC 544
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 801 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 742
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 741 CCCCACGTTGGGC 729
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1262 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1203
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 1202 CCCCACGTTGGGC 1190
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 69 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 10
Query 142562 GCCCCAC 142568
|||||||
Sbjct 9 GCCCCAC 3
Score = 89.7 bits (98), Expect = 1e-12
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||| || |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 329 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 270
Query 142563 CCCCACATCGGGCAGAAGT 142581
|||||| | |||| ||||
Sbjct 269 CCCCACGTTGGGCGAAAGT 251
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1446 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1505
Query 142563 CCCCAC 142568
||||||
Sbjct 1506 CCCCAC 1511
>seq5257
Length=28961
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 13794 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 13735
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 13734 CCCCACGTTGGGC 13722
>seq4878
Length=16897
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2194 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2253
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 2254 CCCCACGTTGGGC 2266
>seq1575
Length=11575
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 11150 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11091
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 11090 CCCCACGTTGGGC 11078
>seq6298
Length=14097
Score = 89.7 bits (98), Expect = 1e-12
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||| || |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 13626 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 13685
Query 142563 CCCCACATCGGGCAGAAGT 142581
|||||| | |||| ||||
Sbjct 13686 CCCCACGTTGGGCGAAAGT 13704
>seq18336
Length=594
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 67 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8
Query 142563 CCCCAC 142568
||||||
Sbjct 7 CCCCAC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027038367058989
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |