Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 1e-15 seq1367 84.2 5e-13 >seq1 Length=42806 Score = 93.3 bits (102), Expect = 1e-15 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| |||||||| |||||| | || || ||||||| |||| | | |||||| Sbjct 12307 TGTACGTTTCACAAGTACGGTACCTCCGGGGAAGTGGAAAAGCACGACGCGTTGTGCATC 12248 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| || |||||||||||||| |||||||| ||||| ||||| |||||| Sbjct 12247 CTCCCGCTCAATGTGGTCAACGAGAAAATCTACATCTTCCTTTGGTTTTGGTTC 12194 >seq1367 Length=64699 Score = 84.2 bits (92), Expect = 5e-13 Identities = 204/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 3199 TGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATA 3258 ||||| | || || || ||||| || |||| ||||| | ||||||| || ||| | Sbjct 25193 TGCGAAGTCCTCAATTTCGTCAATGTCGTCGGCCAGATCTACTTCATGGATTACTTCTTG 25134 Query 3259 GGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCAT 3318 |||| || ||| | |||||| | |||| | | ||||| || | | || | Sbjct 25133 GGCGGCGAATTTACGACCTACGGATCCGATGTCATCAACTTCACGGAG-ATGGAGCA-AG 25076 Query 3319 CCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCAC 3378 || | ||| |||||||| |||||| || | | |||| || || || || Sbjct 25075 AAGAGCGA-ACGGACCCCATGGCCAAAGTCTTCCCCAAAGTCACCAAGTGCACCTTCTAC 25017 Query 3379 AAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAAC 3438 ||||||||||| |||||| | | || || ||| || | || |||| || ||| Sbjct 25016 AAATACGGTCCCTCGGGCACGGTCCAACACATCGATGGGATGTGTGTCCTGCCTTTGAAT 24957 Query 3439 GTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATC 3498 | |||||||||||||||||| | ||||| |||||||||||| | | ||||| | || Sbjct 24956 ATTGTCAACGAGAAGATCTACGTGTTCCTTTGGTTCTGGTTCATCCTCTTAGCCGTTTTC 24897 Query 3499 AGCGG 3503 | ||| Sbjct 24896 ACCGG 24892 Score = 80.6 bits (88), Expect = 7e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 ||||||||||||| | ||||| | || | |||||||| ||||||| ||| Sbjct 25714 CCGTGAAGGGCTTGTTGAAGCTCGATTCGGTTTGTATCGACAACAATGTCTTCCGTCTGC 25655 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 | ||| | ||||||||||||||||||||| ||||| ||| |||| || || ||||| | Sbjct 25654 ACTACAAAGCCACCGTGATCATCCTCATCGCCTTTTCCTTGTTGGTTACCTCACGGCAAT 25595 Query 2795 AC 2796 || Sbjct 25594 AC 25593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12471724141500