Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5580 172 1e-37 >seq5580 Length=7482 Score = 172 bits (190), Expect = 1e-37 Identities = 306/439 (70%), Gaps = 12/439 (3%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| ||||| ||||||||||| ||||| |||||||| ||| ||| | || Sbjct 6052 TGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGATTTGCCC 5993 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| |||||| || |||||||| ||||||||||||||||| ||||| || ||| Sbjct 5992 AAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATGGAAAACA 5933 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || || |||| | | || |||| || |||| |||| | | | | | Sbjct 5932 TTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCC--GATCTCCTGATGAGAA 5875 Query 42604 ACGG--GCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | ||||||| || || || || | || || | ||||||||||| || ||||| Sbjct 5874 ACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGATTGGGC 5815 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAAC--GTTCGGC-GAGAGGCTGGTAGCCTTTAC 42718 | || |||||| | | || || | ||| || ||| | | | |||||| | Sbjct 5814 CTTTAAATGGATCTC---TGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTTGC 5758 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA- 42777 ||||||||||| || || ||||| ||| | || |||||||| |||||||| ||| ||| Sbjct 5757 AGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAGAG 5698 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 |||| | ||||||||| || || || || ||||| ||||| | |||||||| ||| Sbjct 5697 AGGT-TTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTGC 5639 Query 42838 ATAGGGACTTTGCCTGCCT 42856 || | || ||||| ||||| Sbjct 5638 ATTGCGATTTTGCTTGCCT 5620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943623520733040