Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6222 140 8e-28 seq3468 136 9e-27 >seq6222 Length=12937 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | || || || |||||||| |||||||| || ||||| Sbjct 4685 TTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAA 4744 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 4745 AATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTT 4804 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | ||| ||||| | ||||||||||| || || ||||| ||||| Sbjct 4805 CTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGAC 4864 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 4865 GAAAATTTGCAT 4876 Score = 129 bits (142), Expect = 1e-24 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||||||||||||||| || || | | || || |||||||| || ||| Sbjct 4218 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCAACTGT 4277 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||| | || ||||| ||| ||| || |||||||| || |||||| Sbjct 4278 TTGCCAGCGAAGATTAATCGTTGTTG---ATCGGGGGGAATGCCTTCTTTGTCTTGGATT 4334 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || ||||| |||||||| || | || | || ||||| | ||||| || || ||| Sbjct 4335 TTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCG 4394 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| |||||||| Sbjct 4395 GTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | ||| | ||| | ||| |||||| || || || || | Sbjct 5102 CATG-CCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAAT 5160 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | ||| || || ||||| ||||| || || ||||| || | ||| || || | Sbjct 5161 CTGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAG 5220 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| |||||||| || || ||||| ||||| |||||||| || | ||| | | Sbjct 5221 GGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCT 5280 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||||| || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 5281 CTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATT 5333 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||||||||||||||| || || | | || || |||||||| | ||| Sbjct 4446 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCAGTTGC 4505 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| ||||| ||||| | || || |||||||| || ||||| || Sbjct 4506 TTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATCTTG 4565 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| |||||||| || | || || || ||||| | ||||| || || |||||| Sbjct 4566 GCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGCCGGTC 4625 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||| ||||| || ||||| Sbjct 4626 AAAGTCTTCACGAAGATTTGCAT 4648 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| |||||||||||| || ||||| | | || || |||||||| |||||| Sbjct 4902 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGT 4961 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| |||| ||| |||||| || || |||||||| || |||||||| Sbjct 4962 TTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTA 5021 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| || || ||||| | || || ||||| || ||| Sbjct 5022 GCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTC 5081 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | || |||||||| || ||||| Sbjct 5082 AAGGTTTTGACGAAAATTTGCAT 5104 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||||||||||| | || || || ||||| ||||| || || ||||| Sbjct 3773 TTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAA 3832 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| || ||| || || ||||| || || || ||||| ||||| ||||| Sbjct 3833 GATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTT 3892 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||| ||||| | ||||| || || || |||| || || || Sbjct 3893 TTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCAC 3952 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 3953 GAAGATTTGCAT 3964 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || |||||| ||||| || ||||||| Sbjct 3966 CCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 4025 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || |||||||| || || || || || |||| ||| |||||| || Sbjct 4026 AAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGA 4085 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || |||||||| || || ||||| || || | || | ||| ||| Sbjct 4086 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACT 4145 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || || || || || || || |||||||| Sbjct 4146 TCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 >seq3468 Length=50068 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | || || | |||||||| |||||||| || ||||||| Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||| |||||| ||||||||||| || || |||||||| || || || |||| Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| || | || || || || ||||| ||||| || |||| ||||||||||| Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 38287 AGATCTGCAT 38278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178738033771462