Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 140 8e-28
seq3468 136 9e-27
>seq6222
Length=12937
Score = 140 bits (154), Expect = 8e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || ||||| | || || || |||||||| |||||||| || |||||
Sbjct 4685 TTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAA 4744
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| | ||| |||||| | || || ||||||||||| || ||||| ||||| |||||
Sbjct 4745 AATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTT 4804
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| ||| | ||| ||||| | ||||||||||| || || ||||| |||||
Sbjct 4805 CTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGAC 4864
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 4865 GAAAATTTGCAT 4876
Score = 129 bits (142), Expect = 1e-24
Identities = 153/206 (74%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| ||||||||||||||| || || | | || || |||||||| || |||
Sbjct 4218 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCAACTGT 4277
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387
|| || |||||||| | || ||||| ||| ||| || |||||||| || ||||||
Sbjct 4278 TTGCCAGCGAAGATTAATCGTTGTTG---ATCGGGGGGAATGCCTTCTTTGTCTTGGATT 4334
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|| ||||| |||||||| || | || | || ||||| | ||||| || || |||
Sbjct 4335 TTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCG 4394
Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||| ||||| ||||||||
Sbjct 4395 GTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 129 bits (142), Expect = 1e-24
Identities = 169/233 (73%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | | ||| | ||| | ||| |||||| || || || || |
Sbjct 5102 CATG-CCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAAT 5160
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | | ||| || || ||||| ||||| || || ||||| || | ||| || || |
Sbjct 5161 CTGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAG 5220
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| |||||||| || || ||||| ||||| |||||||| || | ||| | |
Sbjct 5221 GGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCT 5280
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|||||||||| || || ||||| || ||||| ||||| ||||| || ||||||
Sbjct 5281 CTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATT 5333
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| ||||||||||||||| || || | | || || |||||||| | |||
Sbjct 4446 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCAGTTGC 4505
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || |||||||| ||||| ||||| | || || |||||||| || ||||| ||
Sbjct 4506 TTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATCTTG 4565
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| |||||||| || | || || || ||||| | ||||| || || ||||||
Sbjct 4566 GCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGCCGGTC 4625
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| |||||| ||||| || |||||
Sbjct 4626 AAAGTCTTCACGAAGATTTGCAT 4648
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| |||||||||||| || ||||| | | || || |||||||| ||||||
Sbjct 4902 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGT 4961
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||| |||| ||| |||||| || || |||||||| || ||||||||
Sbjct 4962 TTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTA 5021
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || |||||||| || | ||| || || ||||| | || || ||||| || |||
Sbjct 5022 GCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTC 5081
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| || |||||||| || |||||
Sbjct 5082 AAGGTTTTGACGAAAATTTGCAT 5104
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || |||||||||||||||| | || || || ||||| ||||| || || |||||
Sbjct 3773 TTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAA 3832
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| || ||| || || ||||| || || || ||||| ||||| |||||
Sbjct 3833 GATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTT 3892
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | ||| || ||| ||||| | ||||| || || || |||| || || ||
Sbjct 3893 TTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCAC 3952
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 3953 GAAGATTTGCAT 3964
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||||| || |||||| ||||| || |||||||
Sbjct 3966 CCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 4025
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || |||||||| || || || || || |||| ||| |||||| ||
Sbjct 4026 AAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGA 4085
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || || |||||||| || || ||||| || || | || | ||| |||
Sbjct 4086 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACT 4145
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||||||||| || || || || || || || ||||||||
Sbjct 4146 TCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
>seq3468
Length=50068
Score = 136 bits (150), Expect = 9e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| ||||| || ||||| | || || | |||||||| |||||||| || |||||||
Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
||| ||| |||||| ||||||||||| || || |||||||| || || || ||||
Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
| |||| || | || || || || ||||| ||||| || |||| |||||||||||
Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288
Query 288464 ATATCTGCAT 288473
| ||||||||
Sbjct 38287 AGATCTGCAT 38278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178738033771462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |