Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7813 105 8e-18 seq5580 93.3 5e-14 >seq7813 Length=5936 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114446 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 114505 ||||| || || || || || || || || |||| ||| || |||| | || ||| Sbjct 1846 TCTTCTTTCACGAACATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCC 1905 Query 114506 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 114565 | | || || | |||||||||||||| ||| || | || ||||| |||| ||| Sbjct 1906 GGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTT 1965 Query 114566 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 114625 | ||||| || ||| |||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1966 TGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025 Query 114626 GTTTGGGACTTGAGAATAGCC 114646 |||||| | | ||||||| Sbjct 2026 ACTTGGGAGTCAATAATAGCC 2046 >seq5580 Length=7482 Score = 93.3 bits (102), Expect = 5e-14 Identities = 427/662 (65%), Gaps = 28/662 (4%) Strand=Plus/Plus Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832 |||||| ||||| || ||||| || || ||| || || |||||||| || || ||||| Sbjct 5352 CTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTT 5411 Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG---GAGACGATCCGAGACGTA 125889 | || || |||| |||| || | ||| || ||| || || | |||| | Sbjct 5412 TTCGGAATTGTAAATC-TTGGGACATTGAA--GTTCGACCAAGAGCCGGTCTGCGACGAA 5468 Query 125890 CTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA-GGTTACATGGGAGCGCGT 125948 ||||||||||| |||| ||| ||||||| || | | || ||| || | || | Sbjct 5469 CTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACC-GGTAAAGCAT 5527 Query 125949 CCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG-GCGTGAATGGTGTCC 126007 | | ||| | | ||| || |||| || || || | ||| |||| | | | | Sbjct 5528 CGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGTAACGCGAG-CG 5586 Query 126008 ACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCC 126067 || || ||| | ||| |||| ||| | | ||||| || || | |||| Sbjct 5587 ACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACCC 5646 Query 126068 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTC 126127 |||||||| || ||||| || || || || || || ||||| | ||| | ||||||| Sbjct 5647 TCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTTC 5706 Query 126128 AACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCA 126187 | ||||||||| | ||| || || ||||| || || ||||| || || || || Sbjct 5707 AGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGCG 5766 Query 126188 AAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCA---AACCACTTCATCGCCCACTG 126243 | || ||||||||||| | || || ||||| | ||| || | ||||| | Sbjct 5767 ATGACTCGCTCAGCAAA----ACCTGCTGTGTTGTCAGAGATCCATTTAAAGGCCCAATC 5822 Query 126244 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT-TTTCTG 126302 ||||| |||| | ||| || | ||| | ||| ||| || || | ||| ||||| Sbjct 5823 GGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG---CATCTGTTTCTC 5879 Query 126303 AT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTC 126360 || ||| | ||| || | || || | |||||| ||||| || | |||| Sbjct 5880 ATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATGAATGTTTTC 5939 Query 126361 ATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 126418 |||||| ||| | |||||||| ||||||||||| | ||| || || | |||| Sbjct 5940 --CATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGCA 5997 Query 126419 AA 126420 || Sbjct 5998 AA 5999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596900888107320