Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_010237.1
Length=63395
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 598 2e-166
seq9686 306 1e-78
>seq4723
Length=43540
Score = 598 bits (662), Expect = 2e-166
Identities = 677/911 (74%), Gaps = 15/911 (2%)
Strand=Plus/Minus
Query 5827 TTCATTACCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 5886
|||||| |||||| ||||||||| || || |||||||| || ||||| ||||| || |
Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227
Query 5887 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCA 5946
||||||| ||||||||||||||||||||| |||||||| || || | || || | ||
Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167
Query 5947 CGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCAT 6006
||||| || | |||||| || |||||||| ||||| || ||||||||| ||||||| |
Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107
Query 6007 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCT 6066
|||| || | ||||||||||||||| |||||||||||||| || || || |||||||
Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047
Query 6067 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 6126
| || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || |
Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987
Query 6127 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 6186
|||| | ||| |||||| | || || ||||||||||| ||||||||| | |||||||
Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927
Query 6187 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCCGG 6246
| ||| |||||| || || | || | ||||||| |||||||| || ||||||| |
Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867
Query 6247 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGGGCCACAC 6306
|||| | ||| | ||||| ||||| ||||| | ||| |||||||||||||| | || |
Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807
Query 6307 CGGCGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 6366
||| ||| || || |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747
Query 6367 TTCCTGATTGGGGTTTTGCTATTACGTTGTGAATTTCTGAAGCTGTGATGACGCCGAGCC 6426
| || || | ||||| | ||||||||| | ||| || || || || |||||||| |
Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687
Query 6427 GTAATTTGTGCCACGCATCATCTCCCTGTTCGACAGCTCTCACGTCGATCCCAGTACGCT 6486
| | | |||||||| ||||| || || ||||| | | | ||||| || || || ||
Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627
Query 6487 GCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGTTCAGTGGCTTTTTGTTTCAGGAA 6546
||||||||| || ||||||||||||| ||| || || || |||||
Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582
Query 6547 TCCAAGAACTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCACGAATGTCGCGGCG 6606
|| ||| |||| || |||||| || |||| || || | ||||| ||| ||
Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522
Query 6607 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 6666
|| || | || |||||||| | | ||| ||||||| || |||| || || || ||
Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462
Query 6667 CAGAGTGTTAATTTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 6726
|| | || | ||| | || ||||| || |||| | | ||||||||| |||||
Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402
Query 6727 ACGTTCTGCAG 6737
||| || ||||
Sbjct 1401 ACGCTCGGCAG 1391
Score = 111 bits (122), Expect = 6e-20
Identities = 479/736 (65%), Gaps = 35/736 (5%)
Strand=Plus/Minus
Query 143 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAT 200
||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| |||||
Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074
Query 201 GCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 260
||||| |||| ||||| || |||| | || | |||||| || || || || | |||
Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014
Query 261 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 320
||||| | || | | || || || || | ||||| ||||| |||||||| || |
Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954
Query 321 ATGGAGCTTACCGCGTAGTTAATACCCGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 375
| || || | | ||| | | |||| | | | ||| | | ||| || |
Sbjct 7953 ACAGAATCGACAGTGAAGTGA-TCGCCGCATACTCCGGTTCGGGAGGTAACAGAA----G 7899
Query 376 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTG 430
|| ||||| ||||| || || |||||| || | ||| || || || || | ||
Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844
Query 431 AACAGTGATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 490
|||| | | |||| | | | ||| || | | | | || |||| || || ||
Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784
Query 491 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGT 550
||||| ||| | || |||||||||| ||| || || || | ||||||||| | |||
Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724
Query 551 AAAATCACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 610
||| | | | || | || |||| | | | ||||| ||| ||||||||||||
Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667
Query 611 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 668
||||||||| | ||| || ||| || || ||| | |||||| | |||| |
Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609
Query 669 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 728
| ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| ||
Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549
Query 729 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 788
|| | || || || || || | || | ||| ||||||| ||| || |||||
Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489
Query 789 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 846
|| | || | ||| || || || | |||| ||| |||| | || | | | | ||||
Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431
Query 847 TGTAATAGTTCACTGT 862
|||| | |||||||||
Sbjct 7430 TGTAGTTGTTCACTGT 7415
>seq9686
Length=37809
Score = 306 bits (338), Expect = 1e-78
Identities = 354/474 (75%), Gaps = 11/474 (2%)
Strand=Plus/Plus
Query 21949 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTATGAG 22008
||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 22009 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 22068
|||||| | ||| |||| ||||| || |||||||| ||||| | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 22069 TCACGTCCACAGTGCTGTGACGATGATGCGATGGTGATATGCGGGTGCATAGCCCGCCTT 22128
|| || |||||||| ||||| |||||||||||||| | ||||||||||| ||| | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 22129 TACCGGAACAATCGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 22188
|| |||||||||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 22189 TTCATGGCGTTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 22248
|| |||||| |||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 22249 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 22308
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 22309 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 22367
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 22368 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCAC 22421
|||||||| |||||||| | | ||||| || |||||||||| || | | |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACAC 622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202589392773964
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