Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6222 105 7e-18 seq15288 98.7 1e-15 seq24169 95.1 1e-14 seq15287 93.3 5e-14 seq11156 93.3 5e-14 seq7128 91.5 2e-13 seq119 91.5 2e-13 seq39891 89.7 6e-13 seq39572 89.7 6e-13 seq9514 89.7 6e-13 seq4683 89.7 6e-13 seq3181 89.7 6e-13 seq826 89.7 6e-13 seq91 82.4 8e-11 >seq6222 Length=12937 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||||| ||||| || | ||| || ||||| ||||||||||||| Sbjct 4421 ACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4480 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || || ||||| || ||||| ||||| || || ||||| | || Sbjct 4481 CAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGG 4540 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||||| ||| || ||||| | | | ||||| || || || Sbjct 4541 AATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAAC 4600 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || | ||||| || ||||||||||| Sbjct 4601 TTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||| | || ||||| || ||||| || || | || || || | Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||||| ||||| || | || ||||| |||| || | | ||||| Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| |||| | ||||| | | | |||||| || ||| || || | |||| Sbjct 3869 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||||| | || || || ||||||||||| Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||| | ||||| || | ||| || ||||| ||||||||||||| Sbjct 4193 ACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4252 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || || |||| || | ||| || |||||||| || | ||| || || |||| || Sbjct 4253 TAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGG 4312 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||||| |||||| ||||| | | | ||||| | || || Sbjct 4313 AATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGAC 4372 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || ||||| || || || ||||| Sbjct 4373 TTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||||| ||| || || ||||| |||||||| | || || || | Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||| |||||||| || | || |||||||| | || | | || || Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| |||| | ||||| | | | || || | || || |||| || | Sbjct 5237 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 | || |||||||| || ||||| || ||||||||||||| Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334 >seq15288 Length=1633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| || || | |||||||||| ||||||||||||||||||||| |||| Sbjct 843 AAAAATT--CTCCCCGACAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 900 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 901 TCACCACTATACTATCGAGGA 921 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||||| || | |||||||||| ||||||||||||||||||||| ||||| Sbjct 387 AAAATATTCTCCCCGACGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 446 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| ||| || Sbjct 447 CACCACTATACTATCGAAGA 466 >seq24169 Length=604 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 10 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGAT 69 Query 57080 TG 57081 || Sbjct 70 TG 71 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||||| ||||| | | | |||||||||| ||||||||||||||||||||| | Sbjct 301 ATAAAAAATTCTCTCC--GACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 244 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| ||| || Sbjct 243 TACTGACCACTATACTATCGAAGA 220 >seq15287 Length=6565 Score = 93.3 bits (102), Expect = 5e-14 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 56983 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGT 57042 |||| || |||| |||||| |||| || | | |||||||||| |||||||||||| Sbjct 2100 AAATAAAATTTTA--AAAAAT---CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGT 2154 Query 57043 GACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||| |||||||||||||||||| |||||| Sbjct 2155 GACAGGCGGGGATACTCACCACTATACTATCGAGGA 2190 >seq11156 Length=7987 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 || |||| ||||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 7911 TGTAAAAATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7970 Query 57056 ACTCACCACTATACTA 57071 |||||||||||||||| Sbjct 7971 ACTCACCACTATACTA 7986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 7245 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7304 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 7305 ATACTATCGAGGA 7317 >seq7128 Length=6786 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1274 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1215 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1214 ATACTATCGAGGA 1202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 6781 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 6723 >seq119 Length=83455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 12616 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12675 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 12676 ATACTATCGAGGA 12688 >seq39891 Length=205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 9 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 67 >seq39572 Length=738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 524 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 583 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 584 TACTATCGAGGA 595 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 665 AAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 724 Query 57059 CACCACTATACTA 57071 ||||||||||||| Sbjct 725 CACCACTATACTA 737 >seq9514 Length=1590 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1585 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 1527 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 56990 CGTTTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGG 57048 |||| || ||||| | | ||| || | | |||||||| | |||||||||||||||||| Sbjct 1414 CGTTAATAAAAAACATACCTCCCCGACGGGGAATCGAACACCGGTCTCCCGCGTGACAGG 1355 Query 57049 CGGACATACTCACCACTATACTACCGAGGA 57078 ||| ||||| |||||||||||| |||||| Sbjct 1354 CGGGGATACTGACCACTATACTATCGAGGA 1325 >seq4683 Length=10136 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 5 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 63 >seq3181 Length=13172 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 5 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 63 >seq826 Length=9839 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| | ||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 9762 ATAAAAAAATATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9821 Query 57055 TACTCACCACTATACTA 57071 ||||||||||||||||| Sbjct 9822 TACTCACCACTATACTA 9838 >seq91 Length=30772 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30705 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30764 Query 57067 TACTACCG 57074 ||||| || Sbjct 30765 TACTATCG 30772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542801119389360