Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 105 7e-18
seq15288 98.7 1e-15
seq24169 95.1 1e-14
seq15287 93.3 5e-14
seq11156 93.3 5e-14
seq7128 91.5 2e-13
seq119 91.5 2e-13
seq39891 89.7 6e-13
seq39572 89.7 6e-13
seq9514 89.7 6e-13
seq4683 89.7 6e-13
seq3181 89.7 6e-13
seq826 89.7 6e-13
seq91 82.4 8e-11
>seq6222
Length=12937
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| ||||||| ||||| || | ||| || ||||| |||||||||||||
Sbjct 4421 ACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4480
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || || ||||| || ||||| ||||| || || ||||| | ||
Sbjct 4481 CAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGG 4540
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || ||||| ||| || ||||| | | | ||||| || || ||
Sbjct 4541 AATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAAC 4600
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||||||||| || | ||||| || |||||||||||
Sbjct 4601 TTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| |||||||| | || ||||| || ||||| || || | || || || |
Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | |||||||| ||||| || | || ||||| |||| || | | |||||
Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| |||| | ||||| | | | |||||| || ||| || || | ||||
Sbjct 3869 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||||||| | || || || |||||||||||
Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| ||||| | ||||| || | ||| || ||||| |||||||||||||
Sbjct 4193 ACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4252
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
| || || |||| || | ||| || |||||||| || | ||| || || |||| ||
Sbjct 4253 TAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGG 4312
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || ||||| |||||| ||||| | | | ||||| | || ||
Sbjct 4313 AATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGAC 4372
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||||||||| || || ||||| || || || |||||
Sbjct 4373 TTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 86.0 bits (94), Expect = 7e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| |||||||||| ||| || || ||||| |||||||| | || || || |
Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | ||||| |||||||| || | || |||||||| | || | | || ||
Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| |||| | ||||| | | | || || | || || |||| || |
Sbjct 5237 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210
| || |||||||| || ||||| || |||||||||||||
Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334
>seq15288
Length=1633
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/81 (88%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||||| |||| || || | |||||||||| ||||||||||||||||||||| ||||
Sbjct 843 AAAAATT--CTCCCCGACAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 900
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||| ||||||
Sbjct 901 TCACCACTATACTATCGAGGA 921
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
||||| |||||| || | |||||||||| ||||||||||||||||||||| |||||
Sbjct 387 AAAATATTCTCCCCGACGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 446
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||| ||| ||
Sbjct 447 CACCACTATACTATCGAAGA 466
>seq24169
Length=604
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 10 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGAT 69
Query 57080 TG 57081
||
Sbjct 70 TG 71
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||||||| ||||| | | | |||||||||| ||||||||||||||||||||| |
Sbjct 301 ATAAAAAATTCTCTCC--GACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 244
Query 57055 TACTCACCACTATACTACCGAGGA 57078
|||| |||||||||||| ||| ||
Sbjct 243 TACTGACCACTATACTATCGAAGA 220
>seq15287
Length=6565
Score = 93.3 bits (102), Expect = 5e-14
Identities = 79/96 (82%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 56983 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGT 57042
|||| || |||| |||||| |||| || | | |||||||||| ||||||||||||
Sbjct 2100 AAATAAAATTTTA--AAAAAT---CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGT 2154
Query 57043 GACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
||||||||| |||||||||||||||||| ||||||
Sbjct 2155 GACAGGCGGGGATACTCACCACTATACTATCGAGGA 2190
>seq11156
Length=7987
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| ||||||| || | | |||||||||| ||||||||||||||||||||| ||
Sbjct 7911 TGTAAAAATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7970
Query 57056 ACTCACCACTATACTA 57071
||||||||||||||||
Sbjct 7971 ACTCACCACTATACTA 7986
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 7245 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7304
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 7305 ATACTATCGAGGA 7317
>seq7128
Length=6786
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1274 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1215
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 1214 ATACTATCGAGGA 1202
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 6781 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 6723
>seq119
Length=83455
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 12616 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12675
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 12676 ATACTATCGAGGA 12688
>seq39891
Length=205
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 9 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 67
>seq39572
Length=738
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 524 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 583
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 584 TACTATCGAGGA 595
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| |||||| || | | |||||||||| ||||||||||||||||||||| |||||
Sbjct 665 AAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 724
Query 57059 CACCACTATACTA 57071
|||||||||||||
Sbjct 725 CACCACTATACTA 737
>seq9514
Length=1590
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1585 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 1527
Score = 82.4 bits (90), Expect = 8e-11
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 56990 CGTTTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGG 57048
|||| || ||||| | | ||| || | | |||||||| | ||||||||||||||||||
Sbjct 1414 CGTTAATAAAAAACATACCTCCCCGACGGGGAATCGAACACCGGTCTCCCGCGTGACAGG 1355
Query 57049 CGGACATACTCACCACTATACTACCGAGGA 57078
||| ||||| |||||||||||| ||||||
Sbjct 1354 CGGGGATACTGACCACTATACTATCGAGGA 1325
>seq4683
Length=10136
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 5 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 63
>seq3181
Length=13172
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 5 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 63
>seq826
Length=9839
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||||| | ||||| || | | |||||||||| ||||||||||||||||||||| |
Sbjct 9762 ATAAAAAAATATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9821
Query 57055 TACTCACCACTATACTA 57071
|||||||||||||||||
Sbjct 9822 TACTCACCACTATACTA 9838
>seq91
Length=30772
Score = 82.4 bits (90), Expect = 8e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 30705 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30764
Query 57067 TACTACCG 57074
||||| ||
Sbjct 30765 TACTATCG 30772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542801119389360
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