Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6222 143 3e-29 seq7813 132 5e-26 >seq6222 Length=12937 Score = 143 bits (158), Expect = 3e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| ||||| | || || | |||| || ||||||||||| || |||||||| | Sbjct 4421 ACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4480 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| || ||||||||||| | ||||| || || ||||| || || Sbjct 4481 CAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGG 4540 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCA-CCGGCGTCC 64393 ||| |||||||| ||||| | | || ||||| || || | || ||| |||| || Sbjct 4541 AATGCCTTCTTTGTCTTGGA-TCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGC-TCA 4598 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| | ||| | ||| |||||||||||||| || ||||| |||||||| Sbjct 4599 ACTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| ||||| | || || | |||| || ||||||||||| |||||||| || | Sbjct 4877 ACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGA 4936 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| | || ||||| || |||| | || || || |||||||| Sbjct 4937 CAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGG 4996 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCA 64394 ||| |||||||| ||||| ||||| ||| || || | || || |||| || | Sbjct 4997 AATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGC-TCAA 5055 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||||||| ||||| ||||| |||||||||||||| Sbjct 5056 CTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || |||||||||| || |||||||| || |||||||| || | Sbjct 3965 ACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 4024 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | ||||||||||||| |||| | || || || |||||||| Sbjct 4025 CAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGG 4084 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||| ||| || ||| | || || | || || Sbjct 4085 AATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGAC 4144 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||||| || | |||||||| ||||| ||||| Sbjct 4145 TTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| ||||| | || || | |||| || ||||||||||| || |||||||| | Sbjct 4193 ACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGA 4252 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| | ||| ||||| || | || | || || || ||||| || Sbjct 4253 TAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGG 4312 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | |||| ||||| || || | || ||| || || | Sbjct 4313 AATGCCTTCTTTGTCTTGGA-TTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGA 4371 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||| |||||||| | ||| || |||||||| ||||| Sbjct 4372 CTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || | ||| | || ||||| |||||||||||||| || | Sbjct 4649 ACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGA 4708 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| | || |||||||| |||| | || || || || ||||| Sbjct 4709 CAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGG 4768 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | |||| ||||| || ||| | || || | || | Sbjct 4769 AATGCCTTCTTTATCTTG-AATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGA 4827 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||||| || || | |||||| |||||||||||||| Sbjct 4828 CTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| |||||||||||||||| | || || | ||||| | |||||||| Sbjct 5136 GTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCTTCCAATTGCTTGCCA 5195 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || |||||||| || || || |||||||| ||||| | |||| ||||| Sbjct 5196 GCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCTTG-AATTTTGGCTTT 5254 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | ||||| | || ||||| | || | |||||||| |||| || Sbjct 5255 GACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGT 5314 Query 64426 TTTTACGAAAATTTGCATTT 64445 || ||||| |||||||||| Sbjct 5315 CTTCACGAAGATTTGCATTT 5334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || || || || || | | ||| || | ||||| | ||||| ||| Sbjct 3768 GTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGCTTACCG 3827 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||| ||||||||||| ||||| || ||||| | |||| ||||| Sbjct 3828 GCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTG-AATTTTGGCTTT 3886 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || || | || ||||| | || | ||| ||||| ||||| || Sbjct 3887 GACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGT 3946 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| Sbjct 3947 TTTCACGAAGATTTGCAT 3964 >seq7813 Length=5936 Score = 132 bits (146), Expect = 5e-26 Identities = 306/457 (67%), Gaps = 22/457 (5%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| ||||| || || ||||| || | | |||| |||||||| | ||| Sbjct 1876 GATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGTACAC 1935 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | ||| |||| ||||| |||||||||| |||||| ||||| ||| || || || Sbjct 1936 AGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGCATCC 1995 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||| | ||||| || ||||||||||||||||||| |||||||| || | || | Sbjct 1996 TTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT--AGCCGACCAAA 2053 Query 154767 CTT--CGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATT-GTTCGTACAGT 154823 || | || |||||||| |||| || || ||| ||| || | || || Sbjct 2054 GTTGCTGGGCACGAACTTGAC------GCCGATATTTGCCCTCGGATTCGTACTGACGGT 2107 Query 154824 TT-----TTCAAA---CTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGAC 154875 | |||||| |||| | | | ||| ||| || || || | || | Sbjct 2108 ATAAAGCTTCAAATTTCTCT---CCCCATAGGTCATGCAAGCCCGGGCATTCTGCAGGGC 2164 Query 154876 ACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACA 154935 ||||||| |||||||||||| | || ||||| ||||||| || |||| ||||| Sbjct 2165 ACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACA 2224 Query 154936 AAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCA 154995 ||||| || |||||||||||| ||| ||||| || |||| ||| | || | Sbjct 2225 GTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAA 2284 Query 154996 AAAAATCATATATGTCGGCGTGCCACGGCTCTAAATA 155032 || || | | ||| ||||||||||| || ||||| Sbjct 2285 GGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATA 2321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499266137942760