Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq4723 583 4e-162 >seq4723 Length=43540 Score = 583 bits (646), Expect = 4e-162 Identities = 674/911 (74%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 5959 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 6018 ||||| |||||| |||||| || || || |||||||| || ||||| ||||| || | Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227 Query 6019 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 6078 ||||||| ||||||||||||||||||||| |||||||| || || || || || |||| Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167 Query 6079 CGACATAATGCAGTCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 6138 ||||| || | ||||| || ||||| |||||||| || ||||||||| ||||||| | Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107 Query 6139 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 6198 |||| || | ||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047 Query 6199 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 6258 | || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || | Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987 Query 6259 GGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGC 6318 ||||| | ||| |||||| | || || ||||||||||| || |||||| | ||||||| Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927 Query 6319 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAACAGGGTTCTGG 6378 | ||| |||||| || || | || | ||||||| |||||||| || ||||||| | Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867 Query 6379 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACAC 6438 |||| | ||| | ||||| ||||| ||||| | || |||||||||||||| | || | Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807 Query 6439 CGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 6498 ||||||| || || || ||||||||||||||||| |||||||||||||| | |||||||| Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747 Query 6499 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 6558 | || ||||| || || | || |||||| ||||| || || || || |||||||| | Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687 Query 6559 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATTCCGGTACGCT 6618 | | | ||||| || ||||| || || ||||| | | | ||||| || || || || Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627 Query 6619 GCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTCAGAGGCTTTCTGTTTCAGGAA 6678 ||||||||| || |||||||||| || ||| ||||| || ||||| Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582 Query 6679 TCCAAGAACTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 6738 || ||| |||| || |||||| || |||| || || | ||||| ||| || Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522 Query 6739 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 6798 || || | || |||||||| | | ||| ||||||| || |||| || || || || Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462 Query 6799 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 6858 || | || | || | || ||||| || |||| | | ||||||||| ||||| Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402 Query 6859 GCGTTCTGCAG 6869 || || |||| Sbjct 1401 ACGCTCGGCAG 1391 Score = 84.2 bits (92), Expect = 9e-12 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5177 TTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATTAA 5236 || ||||| | |||||||| |||| ||| | ||| |||||||| ||||| | || | Sbjct 5132 TTACGCTGAAGCTCTTCAATCTCTGCTGCGGTATCGATGATGTCAGCCATGGT-CAATGC 5074 Query 5237 TCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAACAATAAAAAAGG 5289 |||| ||| ||| |||||| || |||| |||||| || | |||||||||||| Sbjct 5073 TCCCGGAACTGTCGGTTAAGTCGGTTGAAGGTGAAGGCCAGCAATAAAAAAGG 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198605706950682