Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 131 2e-25
seq5580 113 4e-20
>seq6222
Length=12937
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | ||||| ||||| || || ||||| ||| |
Sbjct 3966 CCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 4025
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| |||| ||| || || || | ||||| || || |||||||||||
Sbjct 4026 AAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGA 4085
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| |||||||| |||||| ||||| | || | |||||| | ||||||
Sbjct 4086 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACT 4145
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| ||||| || || ||||||||||||||||||||
Sbjct 4146 TCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || || || | ||||| || | || || |||||||| |||||||||||
Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || | |||||| |||||| |||| ||||| || |||||||| ||
Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| || ||||| |||||| |||| | ||| | |||||| | |||||||
Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||| ||||| || || |||||||||||
Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
||||| |||||||| | || || || || || ||||| || ||| || || ||| |
Sbjct 3750 CGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCA 3809
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || | || || || ||| ||||||| || |||||||||||||| || || ||||||
Sbjct 3810 TCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTG 3869
Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
| | ||| ||| || |||| | ||| | |||||| | || ||||| | ||| |
Sbjct 3870 T-CTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGAT 3928
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| |||| ||||| || || || |||||
Sbjct 3929 GGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || || || | ||||| || | || || |||||||| || ||||| || |
Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||||| |||||| | ||||| || || |||||||||||
Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| || ||||| |||||| ||||| | ||| | |||||| | ||| |||
Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| |||| ||||| || ||||| ||||||
Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || || |||| ||||| || | || || |||||||| ||||||||||| |
Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || || || || || ||| |||| | || || || || || ||
Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| || ||||| ||| || |||| | ||| | |||||| | ||| |||
Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||||| ||| || || || || |||||
Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
>seq5580
Length=7482
Score = 113 bits (124), Expect = 4e-20
Identities = 287/435 (66%), Gaps = 5/435 (1%)
Strand=Plus/Minus
Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204
||||| || || ||||||||| | || ||||| ||| ||||| | || || |
Sbjct 5768 ATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGG 5709
Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264
|||| | | ||| | |||||||| || || ||| ||||||||| || ||| | |||
Sbjct 5708 CTGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGAC 5649
Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAA-AAGTT 47323
|| || |||| | | ||||| || || ||||| | | | | |||| ||
Sbjct 5648 GAGGGTTTGCATTGCGATTTTGCTTGCCTTATGTACAA----ACATTTGGTCAACAAACC 5593
Query 47324 GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTT 47383
| ||| | ||| | | || | ||| || || | || ||| || || ||
Sbjct 5592 CGGCGTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTATAGAGCAAGAATTCTT 5533
Query 47384 CGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACAT 47443
|||| ||| | || | | | | | || |||||| || |||||| | |||||||
Sbjct 5532 GACCGATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATTTGATGAAACAGTACAT 5473
Query 47444 CGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGA 47503
|| || ||||| ||||| || | || | || | | ||||||||||||| | ||||
Sbjct 5472 TGAGTTCGTCGCAGACCGGCTCTTGGTCGAACTTCAATGTCCCAAGATTTACAATTCCGA 5413
Query 47504 GAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAA 47563
|| || ||||| |||||| | |||||||| | || |||||||| || || || |||||
Sbjct 5412 AAACCCTTTCGACTTTATGGAAAACATTTCCTTAGAAGGCAAGACGAATTTCTTTGAGAA 5353
Query 47564 GCGCGTCGGCGAATA 47578
| || ||||||||
Sbjct 5352 GAAAGTGGGCGAATA 5338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475140435774960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |