Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq4723 206 7e-49 >seq4723 Length=43540 Score = 206 bits (228), Expect = 7e-49 Identities = 271/369 (73%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 30905 GTTGATTTTTAAAGTGATTTAtttttttAAATCCTCTATGCCATACTGTCCTGAACAAAA 30964 |||||||| || |||||||||||| | |||| | | | || | || || |||| Sbjct 42158 GTTGATTTGTATGTTGATTTATTTTTGTG--TCCTGTTAG---TGCTATGCTCAAAAAAA 42104 Query 30965 AACGAGCGAGGA-ATCTGTGTGAAAAGTGAGGATGAGTTCTTTGCGGAGCTTCACCCGCA 31023 | | ||||| || | ||| || || || || || || ||||||||||| ||||| Sbjct 42103 CATTACCGAGGGCATGGTTATGAGTAGCGAAGAGGAATTTTTCGCGGAGCTTCATCCGCA 42044 Query 31024 AGTGGTTGAGGTTCTCGGTACTGCGCTGATGCAGGTACTGGTAGAGCAGCGCGAACCTTC 31083 | | || ||| |||| || | || | |||||||| ||||| |||||||| || || || Sbjct 42043 AATAGTAGAGATTCTTGGCATAGCTGTTATGCAGGTGCTGGTTGAGCAGCGTGAGCCGTC 41984 Query 31084 GCGTGAAGCTTTGATAGAAATGATTCAGGTGCTGTGGCAGGAAGAGGATGTGGACTTGGC 31143 | | || ||||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 41983 AAGGAAGGCGCTGATAGAGATGATTCAGGTTCTGTGGCAGGAAGATGATGTGGACTTGGC 41924 Query 31144 TGTAGAACTGGCTATTGATGTTCTGACACTGCCGAAAGAGTAGGGATCTTTGTGGTTACA 31203 ||||| |||||||||||||| ||| | | ||||||||||||| | ||||| || Sbjct 41923 AGTAGAGCTGGCTATTGATGTGCTGTCGTTATCGAAAGAGTAGGG-GCGGGGTGGTGACC 41865 Query 31204 AGGTGGCGGGCAAAT--GGATGAAATAGCTATGCGTTTGCGTAATTATCAATGAGTTACG 31261 | | |||||| |||| || | ||| | ||||| ||||||||||||| | |||| Sbjct 41864 AAGCGGCGGGGAAATTGGGTAGGAAT--CAATGCGCCACCGTAATTATCAATTACTTACA 41807 Query 31262 TTGGCGGGC 31270 |||||||| Sbjct 41806 CTGGCGGGC 41798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137430582899844