Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 143 2e-29
seq7813 84.2 2e-11
>seq6222
Length=12937
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | ||| || | ||| || ||||||||||| ||||||||||| |||
Sbjct 3738 CCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGAC 3797
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| |||||||| || || ||| | ||||| |||||||| || || |||
Sbjct 3798 AAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGA 3857
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| || ||||||||||| ||||| ||| | ||||||||| | || |||
Sbjct 3858 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACT 3917
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | || | |||||||| || | ||||| || || ||||||||
Sbjct 3918 TCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || | ||| || || ||||||||||| || || || ||
Sbjct 4647 ATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCA 4706
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || ||||||||||| || ||| | || || ||||| || || ||
Sbjct 4707 GACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGA 4766
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||||||||||||||||||||| ||||| || | || | |||||||||| ||
Sbjct 4767 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTGA-CGTTCTCAATAGTGTCGGAAGGTTC 4825
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| | ||| | ||| || || || |||||||| || |||||||||||
Sbjct 4826 GACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
Score = 136 bits (150), Expect = 4e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||| ||||||||||| ||||| | ||| | || ||||| |||
Sbjct 4218 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCAACTGT 4277
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | || |||||||| || || || |||||||||||||| ||||| |||||
Sbjct 4278 TTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGATTTTG 4337
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| ||| | |||||| || | ||||||||| | ||| | |||||||||||
Sbjct 4338 GCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCGGTA 4397
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
||||| || || ||||| |||||
Sbjct 4398 AGAGTCTTCACGAAAATCTGCAT 4420
Score = 134 bits (148), Expect = 1e-26
Identities = 170/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || | |||||| || ||||| || || || || |||||
Sbjct 5103 ATGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATC- 5161
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
|||| | || ||| |||||||| || || ||| | || || ||||||||||| |
Sbjct 5162 -TGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAG 5220
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| || || |||||||| ||||||||||| ||||| ||| | ||| || |||| ||
Sbjct 5221 GGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCT 5280
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| |||||||| |||| || ||||| || || || || || || ||||||||
Sbjct 5281 CTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | || |||||||| || || ||||| || ||||| || || |||
Sbjct 3963 ATACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCG 4022
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || || || || || || | ||||| ||||| || || ||
Sbjct 4023 GACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGA 4082
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||||||||| || ||||| ||||| |||| || | || | |||||| || | ||
Sbjct 4083 GGAATGCCTTCCTTGTCTTGGATTTTAGCCTTGA-CGTTCTCAATGGTGTCTGATGGTTC 4141
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| | ||| | ||| ||||| || || |||||||||||||| |||||
Sbjct 4142 GACTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||| ||||||||||| ||||| | ||| | || |||| |||
Sbjct 4446 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCAGTTGC 4505
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | || | ||||| ||||| || |||||||||||||| ||||| || ||
Sbjct 4506 TTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATCTTG 4565
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| ||| | |||||| || | ||| ||||| | ||| | |||||||||||
Sbjct 4566 GCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGCCGGTC 4625
Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
| ||| || || || |||||||| ||| ||
Sbjct 4626 AAAGTCTTCACGAAGATTTGCATACCGCCAC 4656
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||| |||||||| || || || | ||| || |||||||||
Sbjct 4902 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGT 4961
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | ||||| ||||| || || || |||||||||||||| ||||| |||||
Sbjct 4962 TTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTA 5021
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| ||| | ||||||||| | ||| ||||| | |||| || ||||| ||
Sbjct 5022 GCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTC 5081
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| ||||| || |||||||||||
Sbjct 5082 AAGGTTTTGACGAAAATTTGCAT 5104
>seq7813
Length=5936
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160
|| ||||||||||| |||||||||| || || | || | ||||||||||||| |
Sbjct 1390 ATCTTGCAGTACGATATGTGGAATGTGACTCCAAGTGATCTTTGGGACTGGAGCGCACTG 1331
Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220
||| || | | ||||| | ||||| ||| | ||| | || |||||| ||
Sbjct 1330 AAAGCTAAAATTGCCAAACACGGAGTCCGTAATTCGTTATTGTTAGCTCCCATGCCTACT 1271
Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTG 124280
|| | || || |||||||| || ||||| || || | || | | || ||| |
Sbjct 1270 GCTTCTACGGCACAAATTTTGGGGAACAATGAGTCTATTGAAGCCTATACGTCCAACATT 1211
Query 124281 TACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTG 124334
|| ||||||||| || | ||||| |||||||| | ||||| |||||| ||
Sbjct 1210 TATTCGCGACGAGTCTTGTCTGGCGAATTTCAAGTTGTCAATCACCATTTGTTG 1157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451660643724840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |