Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6222 143 2e-29 seq7813 84.2 2e-11 >seq6222 Length=12937 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||| || | ||| || ||||||||||| ||||||||||| ||| Sbjct 3738 CCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGAC 3797 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| || || ||| | ||||| |||||||| || || ||| Sbjct 3798 AAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGA 3857 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||||||||| ||||| ||| | ||||||||| | || ||| Sbjct 3858 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACT 3917 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | |||||||| || | ||||| || || |||||||| Sbjct 3918 TCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | ||| || || ||||||||||| || || || || Sbjct 4647 ATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCA 4706 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||||||||| || ||| | || || ||||| || || || Sbjct 4707 GACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGA 4766 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||||||||||||||| ||||| || | || | |||||||||| || Sbjct 4767 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTGA-CGTTCTCAATAGTGTCGGAAGGTTC 4825 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| | ||| || || || |||||||| || ||||||||||| Sbjct 4826 GACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||||||||| ||||| | ||| | || ||||| ||| Sbjct 4218 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCAACTGT 4277 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || |||||||| || || || |||||||||||||| ||||| ||||| Sbjct 4278 TTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGATTTTG 4337 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | ||||||||| | ||| | ||||||||||| Sbjct 4338 GCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCGGTA 4397 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| ||||| Sbjct 4398 AGAGTCTTCACGAAAATCTGCAT 4420 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | |||||| || ||||| || || || || ||||| Sbjct 5103 ATGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATC- 5161 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | || ||| |||||||| || || ||| | || || ||||||||||| | Sbjct 5162 -TGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAG 5220 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || |||||||| ||||||||||| ||||| ||| | ||| || |||| || Sbjct 5221 GGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCT 5280 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| |||| || ||||| || || || || || || |||||||| Sbjct 5281 CTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||||||| || || ||||| || ||||| || || ||| Sbjct 3963 ATACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCG 4022 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || || || || || || | ||||| ||||| || || || Sbjct 4023 GACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGA 4082 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| ||||| |||| || | || | |||||| || | || Sbjct 4083 GGAATGCCTTCCTTGTCTTGGATTTTAGCCTTGA-CGTTCTCAATGGTGTCTGATGGTTC 4141 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| | ||| ||||| || || |||||||||||||| ||||| Sbjct 4142 GACTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||||||||| ||||| | ||| | || |||| ||| Sbjct 4446 TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCAGTTGC 4505 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| ||||| || |||||||||||||| ||||| || || Sbjct 4506 TTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATCTTG 4565 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | ||| ||||| | ||| | ||||||||||| Sbjct 4566 GCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGCCGGTC 4625 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | ||| || || || |||||||| ||| || Sbjct 4626 AAAGTCTTCACGAAGATTTGCATACCGCCAC 4656 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || || || | ||| || ||||||||| Sbjct 4902 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCCAATTGT 4961 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||| || || || |||||||||||||| ||||| ||||| Sbjct 4962 TTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTA 5021 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||||||| | ||| ||||| | |||| || ||||| || Sbjct 5022 GCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTGCCAGTC 5081 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||||||||| Sbjct 5082 AAGGTTTTGACGAAAATTTGCAT 5104 >seq7813 Length=5936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 || ||||||||||| |||||||||| || || | || | ||||||||||||| | Sbjct 1390 ATCTTGCAGTACGATATGTGGAATGTGACTCCAAGTGATCTTTGGGACTGGAGCGCACTG 1331 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 ||| || | | ||||| | ||||| ||| | ||| | || |||||| || Sbjct 1330 AAAGCTAAAATTGCCAAACACGGAGTCCGTAATTCGTTATTGTTAGCTCCCATGCCTACT 1271 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTG 124280 || | || || |||||||| || ||||| || || | || | | || ||| | Sbjct 1270 GCTTCTACGGCACAAATTTTGGGGAACAATGAGTCTATTGAAGCCTATACGTCCAACATT 1211 Query 124281 TACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTG 124334 || ||||||||| || | ||||| |||||||| | ||||| |||||| || Sbjct 1210 TATTCGCGACGAGTCTTGTCTGGCGAATTTCAAGTTGTCAATCACCATTTGTTG 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451660643724840