Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq4723 203 8e-48 >seq4723 Length=43540 Score = 203 bits (224), Expect = 8e-48 Identities = 270/369 (73%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 28864 GTTGATTTTTAAAGTGATTTAtttttttAAATCCTCTATGCCATACTGTCCTGAACAAAA 28923 |||||||| || |||||||||||| | |||| | | | || | || || |||| Sbjct 42158 GTTGATTTGTATGTTGATTTATTTTTGTG--TCCTGTTAG---TGCTATGCTCAAAAAAA 42104 Query 28924 AACGAGCGAGGA-ATCTGTGTGAAAAGTGAGGATGAGTTCTTTGCGGAGCTTCACCCGCA 28982 | | ||||| || | ||| || || || || || || ||||||||||| ||||| Sbjct 42103 CATTACCGAGGGCATGGTTATGAGTAGCGAAGAGGAATTTTTCGCGGAGCTTCATCCGCA 42044 Query 28983 AGTGGTTGAGGTTCTCGGTACTGCGCTGATGCAGGTACTGGTAGAGCAGCGCGAACCTTC 29042 | | || ||| |||| || | || | |||||||| ||||| |||||||| || || || Sbjct 42043 AATAGTAGAGATTCTTGGCATAGCTGTTATGCAGGTGCTGGTTGAGCAGCGTGAGCCGTC 41984 Query 29043 GCGTGAAGCTTTGATAGAAATGATTCAGGTGCTGTGACAGGAAGAGGATGTGGACTTGGC 29102 | | || ||||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 41983 AAGGAAGGCGCTGATAGAGATGATTCAGGTTCTGTGGCAGGAAGATGATGTGGACTTGGC 41924 Query 29103 TGTAGAACTGGCTATTGATGTTCTGACACTGCCGAAAGAGTAGGGATCTTTGTGGTTACA 29162 ||||| |||||||||||||| ||| | | ||||||||||||| | ||||| || Sbjct 41923 AGTAGAGCTGGCTATTGATGTGCTGTCGTTATCGAAAGAGTAGGG-GCGGGGTGGTGACC 41865 Query 29163 AGGTGGCGGGCAAAT--GGATGAAATAGCTATGCGTTTGCGTAATTATCAATGAGTTACG 29220 | | |||||| |||| || | ||| | ||||| ||||||||||||| | |||| Sbjct 41864 AAGCGGCGGGGAAATTGGGTAGGAAT--CAATGCGCCACCGTAATTATCAATTACTTACA 41807 Query 29221 TTGGCGGGC 29229 |||||||| Sbjct 41806 CTGGCGGGC 41798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130904085163826