Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq7813 105 8e-18
seq5580 96.9 4e-15
seq985 95.1 1e-14
>seq7813
Length=5936
Score = 105 bits (116), Expect = 8e-18
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 116407 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466
||||| || || || || || || || || |||| ||| || |||| | || |||
Sbjct 1846 TCTTCTTTCACGAACATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCC 1905
Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526
| | || || | |||||||||||||| ||| || | || ||||| |||| |||
Sbjct 1906 GGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTT 1965
Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586
| ||||| || ||| |||||| |||||||||||||| || || ||||| ||||| |||
Sbjct 1966 TGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025
Query 116587 GTTTGGGACTTGAGAATAGCC 116607
|||||| | | |||||||
Sbjct 2026 ACTTGGGAGTCAATAATAGCC 2046
>seq5580
Length=7482
Score = 96.9 bits (106), Expect = 4e-15
Identities = 429/662 (65%), Gaps = 28/662 (4%)
Strand=Plus/Plus
Query 127246 CTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTT 127305
|||||| ||||| || ||||| || || | | || || |||||||| || || |||||
Sbjct 5352 CTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTT 5411
Query 127306 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG---GAGACGATCCGAGACGTA 127362
| || || |||| |||| || | ||| || ||| || || | |||| |
Sbjct 5412 TTCGGAATTGTAAATC-TTGGGACATTGAA--GTTCGACCAAGAGCCGGTCTGCGACGAA 5468
Query 127363 CTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA-GGTTACATGGGAGCGCGT 127421
||||||||||| |||| ||| ||||||| || | | || ||| || | || |
Sbjct 5469 CTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACC-GGTAAAGCAT 5527
Query 127422 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG-GCGTGAATAGTGTCC 127480
| | ||| | | ||| || ||||||| || || | ||| |||| | | | |
Sbjct 5528 CGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGTAACGCGAG-CG 5586
Query 127481 ACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCC 127540
|| || ||| | ||| ||| ||| | | |||||| || || | ||||
Sbjct 5587 ACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACCC 5646
Query 127541 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 127600
|||||||| || ||||| || || || || ||||| ||||| | ||| | |||||||
Sbjct 5647 TCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTTC 5706
Query 127601 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 127660
| ||||||||| | ||| ||||||||||| || || ||||| || || || ||
Sbjct 5707 AGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGCG 5766
Query 127661 AATAGACGCTCGGCAAAGGAGCGGGACTTTG-TATCA---AACCACTTCATCGCCCACTG 127716
| | ||||| ||||| | | | || || | ||| | ||| || | ||||| |
Sbjct 5767 ATGACTCGCTCAGCAAA--ACCTG--CTGTGTTGTCAGAGATCCATTTAAAGGCCCAATC 5822
Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT-TTTCTG 127775
||||| |||| | ||| || | ||| | ||| ||| || || | ||| |||||
Sbjct 5823 GGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG---CATCTGTTTCTC 5879
Query 127776 AT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTC 127833
|| ||| | ||| || | || || | |||||| ||||| || | ||||
Sbjct 5880 ATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATGAATGTTTTC 5939
Query 127834 ATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891
|||||| ||| | |||||||| ||||||||||| | ||| || || | ||||
Sbjct 5940 --CATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGCA 5997
Query 127892 AA 127893
||
Sbjct 5998 AA 5999
>seq985
Length=45870
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| |||||||||||| ||||| || ||||| |||||| |||| || | ||||||
Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||||||| | ||| | |||||| || | ||| || || | |||| |||||
Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGC 176091
|||||||| || || || | || || || | | |||||||| ||
Sbjct 12587 CCGTGATGATAAGCTGAATGTTCAGCTACCGAACCAGCCAACTGGGC 12541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613042245899640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |