Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7813 105 8e-18 seq5580 96.9 4e-15 seq985 95.1 1e-14 >seq7813 Length=5936 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 116407 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 ||||| || || || || || || || || |||| ||| || |||| | || ||| Sbjct 1846 TCTTCTTTCACGAACATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCC 1905 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | | || || | |||||||||||||| ||| || | || ||||| |||| ||| Sbjct 1906 GGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTT 1965 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 | ||||| || ||| |||||| |||||||||||||| || || ||||| ||||| ||| Sbjct 1966 TGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025 Query 116587 GTTTGGGACTTGAGAATAGCC 116607 |||||| | | ||||||| Sbjct 2026 ACTTGGGAGTCAATAATAGCC 2046 >seq5580 Length=7482 Score = 96.9 bits (106), Expect = 4e-15 Identities = 429/662 (65%), Gaps = 28/662 (4%) Strand=Plus/Plus Query 127246 CTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTT 127305 |||||| ||||| || ||||| || || | | || || |||||||| || || ||||| Sbjct 5352 CTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTT 5411 Query 127306 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG---GAGACGATCCGAGACGTA 127362 | || || |||| |||| || | ||| || ||| || || | |||| | Sbjct 5412 TTCGGAATTGTAAATC-TTGGGACATTGAA--GTTCGACCAAGAGCCGGTCTGCGACGAA 5468 Query 127363 CTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA-GGTTACATGGGAGCGCGT 127421 ||||||||||| |||| ||| ||||||| || | | || ||| || | || | Sbjct 5469 CTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACC-GGTAAAGCAT 5527 Query 127422 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG-GCGTGAATAGTGTCC 127480 | | ||| | | ||| || ||||||| || || | ||| |||| | | | | Sbjct 5528 CGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGTAACGCGAG-CG 5586 Query 127481 ACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCC 127540 || || ||| | ||| ||| ||| | | |||||| || || | |||| Sbjct 5587 ACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACCC 5646 Query 127541 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 127600 |||||||| || ||||| || || || || ||||| ||||| | ||| | ||||||| Sbjct 5647 TCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTTC 5706 Query 127601 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 127660 | ||||||||| | ||| ||||||||||| || || ||||| || || || || Sbjct 5707 AGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGCG 5766 Query 127661 AATAGACGCTCGGCAAAGGAGCGGGACTTTG-TATCA---AACCACTTCATCGCCCACTG 127716 | | ||||| ||||| | | | || || | ||| | ||| || | ||||| | Sbjct 5767 ATGACTCGCTCAGCAAA--ACCTG--CTGTGTTGTCAGAGATCCATTTAAAGGCCCAATC 5822 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT-TTTCTG 127775 ||||| |||| | ||| || | ||| | ||| ||| || || | ||| ||||| Sbjct 5823 GGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG---CATCTGTTTCTC 5879 Query 127776 AT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTC 127833 || ||| | ||| || | || || | |||||| ||||| || | |||| Sbjct 5880 ATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATGAATGTTTTC 5939 Query 127834 ATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891 |||||| ||| | |||||||| ||||||||||| | ||| || || | |||| Sbjct 5940 --CATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGCA 5997 Query 127892 AA 127893 || Sbjct 5998 AA 5999 >seq985 Length=45870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || |||||||||||| ||||| || ||||| |||||| |||| || | |||||| Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||||| | ||| | |||||| || | ||| || || | |||| ||||| Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGC 176091 |||||||| || || || | || || || | | |||||||| || Sbjct 12587 CCGTGATGATAAGCTGAATGTTCAGCTACCGAACCAGCCAACTGGGC 12541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613042245899640