Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6222 141 2e-28 seq3468 93.3 1e-13 seq957 86.0 1e-11 >seq6222 Length=12937 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || ||||| || || || |||| ||||||||| | |||||| Sbjct 3972 CGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTG 4031 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | |||||| ||||| || || | ||| || || || ||| ||| ||| Sbjct 4032 CGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCT 4091 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| ||| || | |||||||| || ||| || ||||| Sbjct 4092 TCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAA 4151 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| ||||| |||||||| || Sbjct 4152 GTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTG 4189 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || || |||||||| | ||||||||||| || || | || ||| Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || |||||||| || | ||| || || || ||| ||| |||||| || Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || ||| || | ||||| | | ||| || ||||| |||||||| Sbjct 4785 TGAAT-TTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGT 4843 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||||||||| || |||||||| Sbjct 4844 CTTTCCCGTGAGAGTTTTGACGAAAATTTG 4873 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | |||||||| || ||||| |||| || ||||| | ||| || Sbjct 3744 CGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTA 3803 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| ||||||||||| | ||| ||||| || ||| ||| ||| Sbjct 3804 CGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCT 3863 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || ||||| ||| || || ||| ||| | |||||| | | ||| || ||||| Sbjct 3864 TCCTTGTCTTGAAT-TTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAA 3922 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| | |||||||| || ||||| Sbjct 3923 GGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTG 3961 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || || || ||||||| ||||| |||| ||| || | || || Sbjct 4436 CAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTC 4495 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||| ||||| ||||||||||||||||| || ||||| || ||| |||||| || Sbjct 4496 TTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTC 4555 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| || ||| ||| | |||||| | | || || ||||| ||||| || Sbjct 4556 TTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGT 4615 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| || ||||| Sbjct 4616 TTTGCCGGTCAAAGTCTTCACGAAGATTTG 4645 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || ||||||| ||||||||||| ||| || | || ||| Sbjct 4893 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 4952 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || || ||||| || | ||| || || || ||| ||| |||||| || Sbjct 4953 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCT 5012 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| ||| | |||||| | | || || ||||| || || ||| Sbjct 5013 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTC 5072 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || |||||||| Sbjct 5073 TTGCCAGTCAAGGTTTTGACGAAAATTTG 5101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || ||||| |||||||| |||||||| | |||||| |||| |||||| |||||||| Sbjct 4063 ATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAACATCCAGAAA 4004 Query 200998 GAGTCTACTCTTCACCTTGT 201017 || ||||||||||| || || Sbjct 4003 GAATCTACTCTTCATCTAGT 3984 >seq3468 Length=50068 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| | |||||| || ||||||| || || ||||||||| Sbjct 38468 CCTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAG 38409 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | ||| || || || || |||||||| || || || || ||| || | Sbjct 38408 ATCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTT 38349 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||||| | || || || | ||||| ||||||||||| | ||| || || Sbjct 38348 TCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACG 38289 Query 199619 AAAATTTG 199626 || || || Sbjct 38288 AAGATCTG 38281 >seq957 Length=45873 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||| || ||||| |||| ||| ||||| | ||| || Sbjct 36410 CGAAGGCGGAGCACCAAGTGCAAAGTGGATTCCTTCTGGATGTTATAGTCCGACAAGGTG 36351 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| ||||||||||| | |||||| || || ||| ||| ||| Sbjct 36350 CGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAAACGCTGTTGATCGGGAGGAATACCT 36291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178005803017143