Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 141 2e-28
seq3468 93.3 1e-13
seq957 86.0 1e-11
>seq6222
Length=12937
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || || ||||| || || || |||| ||||||||| | ||||||
Sbjct 3972 CGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTG 4031
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| | |||||| ||||| || || | ||| || || || ||| ||| |||
Sbjct 4032 CGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCT 4091
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || || || ||| ||| || | |||||||| || ||| || |||||
Sbjct 4092 TCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAA 4151
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || ||||| ||||| |||||||| ||
Sbjct 4152 GTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTG 4189
Score = 132 bits (146), Expect = 1e-25
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||||| || || |||||||| | ||||||||||| || || | || |||
Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| || || |||||||| || | ||| || || || ||| ||| |||||| ||
Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||| ||| || || ||| || | ||||| | | ||| || ||||| ||||||||
Sbjct 4785 TGAAT-TTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGT 4843
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| |||||||||||||| || ||||||||
Sbjct 4844 CTTTCCCGTGAGAGTTTTGACGAAAATTTG 4873
Score = 127 bits (140), Expect = 5e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | || ||| | |||||||| || ||||| |||| || ||||| | ||| ||
Sbjct 3744 CGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTA 3803
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||| ||||||||||| | ||| ||||| || ||| ||| |||
Sbjct 3804 CGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCT 3863
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || ||||| ||| || || ||| ||| | |||||| | | ||| || |||||
Sbjct 3864 TCCTTGTCTTGAAT-TTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAA 3922
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || ||||| | |||||||| || |||||
Sbjct 3923 GGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTG 3961
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || | ||| || || || || ||||||| ||||| |||| ||| || | || ||
Sbjct 4436 CAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTC 4495
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||| ||||| ||||||||||||||||| || ||||| || ||| |||||| ||
Sbjct 4496 TTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTC 4555
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| || ||| ||| | |||||| | | || || ||||| ||||| ||
Sbjct 4556 TTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGT 4615
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| ||||| || |||||
Sbjct 4616 TTTGCCGGTCAAAGTCTTCACGAAGATTTG 4645
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || || || ||||||| ||||||||||| ||| || | || |||
Sbjct 4893 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 4952
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| || || || ||||| || | ||| || || || ||| ||| |||||| ||
Sbjct 4953 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCT 5012
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| ||| ||| | |||||| | | || || ||||| || || |||
Sbjct 5013 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTC 5072
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||||| || ||||||||
Sbjct 5073 TTGCCAGTCAAGGTTTTGACGAAAATTTG 5101
Score = 86.0 bits (94), Expect = 1e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|| || ||||| |||||||| |||||||| | |||||| |||| |||||| ||||||||
Sbjct 4063 ATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAACATCCAGAAA 4004
Query 200998 GAGTCTACTCTTCACCTTGT 201017
|| ||||||||||| || ||
Sbjct 4003 GAATCTACTCTTCATCTAGT 3984
>seq3468
Length=50068
Score = 93.3 bits (102), Expect = 1e-13
Identities = 134/188 (71%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
||||| |||| ||||||||||| | |||||| || ||||||| || || |||||||||
Sbjct 38468 CCTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAG 38409
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558
|| | ||| || || || || |||||||| || || || || ||| || |
Sbjct 38408 ATCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTT 38349
Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618
|||| ||||||| | || || || | ||||| ||||||||||| | ||| || ||
Sbjct 38348 TCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACG 38289
Query 199619 AAAATTTG 199626
|| || ||
Sbjct 38288 AAGATCTG 38281
>seq957
Length=45873
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| | ||| || ||||| |||| ||| ||||| | ||| ||
Sbjct 36410 CGAAGGCGGAGCACCAAGTGCAAAGTGGATTCCTTCTGGATGTTATAGTCCGACAAGGTG 36351
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||| ||||| ||||||||||| | |||||| || || ||| ||| |||
Sbjct 36350 CGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAAACGCTGTTGATCGGGAGGAATACCT 36291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178005803017143
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |